View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_25 (Length: 303)
Name: NF3781_low_25
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 10278050 - 10277783
Alignment:
| Q |
24 |
acttaaacttagttcacataagttccataaactgagtttatgtaatgtatataaactgaggttgttgaaaacttagataaattgggttacgtaatctaaa |
123 |
Q |
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| T |
10278050 |
acttaaacttagttcacataagttccacaaactgagtttatgtaaagtatataaactgaggttgttgaaaacttagataaattgggttacgtaatctaaa |
10277951 |
T |
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| Q |
124 |
cggaggtgctcgaattgggttacaaaattacaacttttccaaaatcacctcaatacagttctgtgtgatcaaataagcatacgggatgagtttcaagata |
223 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10277950 |
cggaagtgctcgatttgggttacaaaattacaacttttccaaaaccacctcaatacagttctgtgtgatcaaataagcacacgggatgagtttcaagata |
10277851 |
T |
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| Q |
224 |
tcataaagatgtttatttgggcactagattaacggcagaatgaactaggatcaaacagctttgtattc |
291 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10277850 |
tcataaagatgtttatataggcactagattaacggcagaatgaactaggatcaaacagctttgtattc |
10277783 |
T |
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