View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_3 (Length: 497)
Name: NF3781_low_3
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_3 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0364 (2 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Complemental strand, 14356370 - 14355883
Alignment:
| Q |
10 |
catcatcattgccttgaggtcttctgactgtttcttcacagtttcttctagagcttcttcacgagctttgtattcttctttcattttagccatttgtctc |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14356370 |
catcattattgccttgaggtcttctgactgtttcttcacagtttcttctagagcttcttcacgagctttgtattcttctttcgttttagccatttgtctc |
14356271 |
T |
|
| Q |
110 |
ttcaaagcttcagtcaacatcttctgatcaaacagttcttgctcaagtttcttaactcttttgtcttgttcaggatcttgcttcaatttcttaagaatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14356270 |
ttcaaagcttcagtcaacatcttctgatcaaacagttcttgctcaagtttcttaactcttttgtcttgttcaggatcttgcttcaatttcttaagaatta |
14356171 |
T |
|
| Q |
210 |
aaatcgcgggcttaactttcacttgagtcaaccaagaagtattcagatcctctctgacagatgaagtgatgattggagaggcatctaagaagaatggaga |
309 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14356170 |
aaatcgcaggcttaactttcacttgagtcaaccaagaagtattcagatcctctctaacagatgaagtgatgattgaagaggcatctaagaagaatggaga |
14356071 |
T |
|
| Q |
310 |
gtctgagatgtacaatatgttcctactgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgcttttgagcttttata |
409 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14356070 |
gtctgagatgtacaatatgttccttctgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgattttgagcttttata |
14355971 |
T |
|
| Q |
410 |
gacaatctctgcaagtcacaaaagacgttgtctactacttcccttagagcaatccacttgtcttcataattctcaatgtgaactagat |
497 |
Q |
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| T |
14355970 |
gacaatctctgcaagtcacaaaagacgttgtctactacttcccttagagcaatccacttgtcttcataattctcaatgtgaactagat |
14355883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 62 - 491
Target Start/End: Complemental strand, 19887287 - 19886855
Alignment:
| Q |
62 |
gcttcttcacgagctttgtattcttctttcattttagccatttgtctcttcaaagcttcagtcaacatcttctgatcaaacagttcttgctcaagtttct |
161 |
Q |
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||||||||||| || ||||||||||||||||| | ||||||||||| |||||| ||||| || ||||||||| ||||||| ||||||||| | ||||| |
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| T |
19887287 |
gcttcttcacgtgccttgtattcttctttcatctcagccatttgtcccttcaagttttcagacagcatcttctgctcaaacaattcttgctctaatttct |
19887188 |
T |
|
| Q |
162 |
taactcttttgtcttgttcaggatct---tgcttcaatttcttaagaattaaaatcgcgggcttaactttcacttgagtcaaccaagaagtattcagatc |
258 |
Q |
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||| |||||||||| | ||| ||| | ||||| ||||| ||| ||| ||| ||||| || | | | ||| ||||||||| |||||||| |
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| T |
19887187 |
caacccttttgtcttctacagactctgacttcttcagtttctcaaggattggaatttgtggcttgacatgaagcttagttaaccaagaaagtttcagatc |
19887088 |
T |
|
| Q |
259 |
ctctctgacagatgaagtgatgattggagaggcatctaagaagaatggagagtctgagatgtacaatatgttcctactgacttgcactgcttccatactc |
358 |
Q |
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| || ||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
19887087 |
cactttgatagttgaagtgatgattgaagaggcatctagaaagaatggagagtctgagatgtaaaatatgttccttctgacttccactgcttccatactc |
19886988 |
T |
|
| Q |
359 |
ttgatgacttccttaaaccacttgctaagagactgcttttgagcttttatagacaatctctgcaagtcacaaaagacgttgtctactacttcccttagag |
458 |
Q |
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||||| |||||||||||||| ||| | |||||||| |||||||||| || || | || ||||||||||| | || |||| ||| ||| |||||| |
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| T |
19886987 |
ttgataacttccttaaaccagttgttgagagactgattttgagcttcaatggatagcctttgcaagtcacacataactgtgtccactctttcttttagag |
19886888 |
T |
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| Q |
459 |
caatccacttgtcttcataattctcaatgtgaa |
491 |
Q |
| |
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|| ||||||| |||||||| |||||| |||||| |
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| T |
19886887 |
cagtccacttatcttcatacttctcagtgtgaa |
19886855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 234 - 407
Target Start/End: Complemental strand, 9282 - 9109
Alignment:
| Q |
234 |
gagtcaaccaagaagtattcagatcctctctgacagatgaagtgatgattggagaggcatctaagaagaatggagagtctgagatgtacaatatgttcct |
333 |
Q |
| |
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|||||||||||||| | |||||||||||| |||||||||| | |||| || ||||||||| | |||||||||||||||||| ||||| || ||||||| |
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| T |
9282 |
gagtcaaccaagaaatgttcagatcctctttgacagatgaggatatgactgaagaggcatccaggaagaatggagagtctgatatgtataacttgttcct |
9183 |
T |
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| Q |
334 |
actgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgcttttgagctttta |
407 |
Q |
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|||||| | | |||||||| |||||||||||||||| ||||| || | |||||||| ||||||||||||| |
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| T |
9182 |
tatgacttccgtttcttccatattcttgatgacttccttgaaccagctgtttagagactgattttgagctttta |
9109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 9457 - 9350
Alignment:
| Q |
62 |
gcttcttcacgagctttgtattcttctttcattttagccatttgtctcttcaaagcttcagtcaacatcttctgatcaaacagttcttgctcaagtttct |
161 |
Q |
| |
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||||| ||||| || |||||||||||||| || | | |||||||||||| || ||||| |||||||||||| ||||||| ||||||||| | ||||| |
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| T |
9457 |
gcttcctcacgtgccttgtattcttcttttatctctgacatttgtctcttaaatttttcagacaacatcttctgctcaaacaattcttgctccaatttct |
9358 |
T |
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| Q |
162 |
taactctt |
169 |
Q |
| |
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||||||| |
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| T |
9357 |
caactctt |
9350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 60 - 404
Target Start/End: Complemental strand, 10332085 - 10331738
Alignment:
| Q |
60 |
gagcttcttcacgagctttgtattcttctttcattttagccatttgtctcttcaaagcttcagtcaacatcttctgatcaaacagttcttgctcaagttt |
159 |
Q |
| |
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|||||||||| |||||||| | ||||||||||| |||||||||| ||||||||||||||| | |||||| || |||||||| ||||||| ||| || |
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| T |
10332085 |
gagcttcttcgcgagctttctgctcttctttcataccagccatttgtttcttcaaagcttcagaaatcatcttttgttcaaacagctcttgctgaagctt |
10331986 |
T |
|
| Q |
160 |
cttaactcttttgtcttgttcaggatcttg---cttcaatttcttaagaattaaaatcgcgggcttaactttcacttgagtcaaccaagaagtattcaga |
256 |
Q |
| |
|
|| ||| |||||||||| ||| ||||||| |||||| || | | ||| | || ||| | || | ||||||||||||||||||||||| |||| |
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|
| T |
10331985 |
ctcaacccttttgtctttctcatgatcttgcttcttcaacttttcatgaactggtatttgaggcatgacatacacttgagtcaaccaagaagtatccaga |
10331886 |
T |
|
| Q |
257 |
tcctctctgacagatgaagtgatgattggagaggcatctaagaagaatggagagtctgagatgtacaatatgttcctactgacttgcactgcttccatac |
356 |
Q |
| |
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|||||| ||| ||| ||| || || | ||| ||||| ||| || || ||||||||||| || ||||||||||| ||||||| ||| ||||||||| |
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| T |
10331885 |
tcctctttgatagaatgagtaataatggaggagagatctaggaataagggtgagtctgagatatataatatgttccttctgacttccacaacttccatac |
10331786 |
T |
|
| Q |
357 |
tcttgatgacttccttaaaccacttgctaagagactgcttttgagctt |
404 |
Q |
| |
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| ||| |||||| |||||||| ||| | || ||||| || ||||||| |
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|
| T |
10331785 |
ttctgacgacttctttaaaccagttgttgagtgactgattctgagctt |
10331738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 272 - 481
Target Start/End: Original strand, 88226 - 88435
Alignment:
| Q |
272 |
gaagtgatgattggagaggcatctaagaagaatggagagtctgagatgtacaatatgttcctactgacttgcactgcttccatactcttgatgacttcct |
371 |
Q |
| |
|
||||||||||||| || ||||| | ||||||||||||||||||||||| ||| |||| || |||||| |||| ||| ||||||||| || || || | |
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| T |
88226 |
gaagtgatgattgatgaagcatccataaagaatggagagtctgagatgtataatctgtttcttttgacttccacttctttcatactctttataacctctt |
88325 |
T |
|
| Q |
372 |
taaaccacttgctaagagactgcttttgagcttttatagacaatctctgcaagtcacaaaagacgttgtctactacttcccttagagcaatccacttgtc |
471 |
Q |
| |
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|||| | ||| | || ||||| |||||||||| |||| | ||| |||| ||||| ||||| || |||||| ||| |||||| || |||||||||| |
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| T |
88326 |
gaaactagttgttgagtgactgattttgagcttcattagatagtctttgcagatcacataagactttatctactctttctcttagatcagtccacttgtc |
88425 |
T |
|
| Q |
472 |
ttcataattc |
481 |
Q |
| |
|
|||||||||| |
|
|
| T |
88426 |
ttcataattc |
88435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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