View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3781_low_30 (Length: 263)
Name: NF3781_low_30
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11034529 - 11034770
Alignment:
| Q |
1 |
ccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034529 |
ccataaaacatctcacgacggatatccgcgcaagaaatg---ttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataa |
11034625 |
T |
|
| Q |
101 |
actgtatacgacacccatctcccagcccgaattccgacagagatttgccatagctaccaacatagaaagaattcacatcctgtgagtgtgaagttctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
11034626 |
actgtatacgacacccatctcccagcccgaattccgacagagatttaccatagctaccaacatagaaagaattcacatcctgtgaatttgaagttctatt |
11034725 |
T |
|
| Q |
201 |
catacaattaccaatgtatgagtattccatccgatttggacaact |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034726 |
catacaattaccaatgtatgagtattccatccgatttggacaact |
11034770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 11009179 - 11009354
Alignment:
| Q |
64 |
ccatcatcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgccatagctaccaacat |
163 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| |||| ||||||| ||||||| ||| |||||| |||||||||| ||||||| |||||||| |
|
|
| T |
11009179 |
ccatcatcttcaacatcccaag---tgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacat |
11009275 |
T |
|
| Q |
164 |
agaaagaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgagtattccatccgatttggaca |
242 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
11009276 |
agaaagaattcacatcctgtgaatatgaagttctattcatacaattaccaatgtatgaatattccatccgattcggaca |
11009354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 10975216 - 10975393
Alignment:
| Q |
68 |
catcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgccatagctaccaacatagaa |
167 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||| || |||||| ||| || | | |||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
10975216 |
catcttcaaaatttaaagatgtgagatacataaactctacacgacaagtgtctttcaacaccaattccgaaagagatttgctgtagcgaccaacatagaa |
10975315 |
T |
|
| Q |
168 |
agaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgagtattccatccgatttggacaact |
245 |
Q |
| |
|
| |||| | | ||||||| |||| ||| ||||||| ||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
10975316 |
acgattcccgtgttgtgagtatgaaccactactcatacagttaccaacgtatgagtattccgtccaatttggacaact |
10975393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University