View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_32 (Length: 253)
Name: NF3781_low_32
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 27442593 - 27442823
Alignment:
| Q |
16 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttata |
115 |
Q |
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| T |
27442593 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacaacttcaataagttt--attcaacttcatggacaaaaataatttata |
27442690 |
T |
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| Q |
116 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccagatttgtcatatctttgata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27442691 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccacatttgtcatatctttgata |
27442790 |
T |
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| Q |
216 |
aattaattggtaa-tcattgtaatagatagact |
247 |
Q |
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| T |
27442791 |
aattaattggtaactcattgtaatagagagact |
27442823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 251
Target Start/End: Complemental strand, 27434007 - 27433799
Alignment:
| Q |
43 |
tctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttataaaagaacaatggataccaaattttgtc |
142 |
Q |
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|||||||| ||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
27434007 |
tctaacacggaaaaattaaactacacaacttcaataagttt--attcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtc |
27433910 |
T |
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| Q |
143 |
cctcgcaaaccaatcatccaatccttgacaaatatacacatattaatccc-ccagatttgtcatatctttgataaattaattggtaa-tcattgtaatag |
240 |
Q |
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| T |
27433909 |
cctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgaacaattttcatatcttagataaattaatcgttaactcattataatag |
27433810 |
T |
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| Q |
241 |
atagactaatt |
251 |
Q |
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| ||||||||| |
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| T |
27433809 |
agagactaatt |
27433799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 27434138 - 27434051
Alignment:
| Q |
31 |
taataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttataaaaga |
120 |
Q |
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||||||| |||||||||||| |||||||||||||||||| |||||||| || ||||||||||| || ||| ||||| |||||||||| |
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| T |
27434138 |
taataccaaaagtctaacacggaaaaattaaattacacaacttcaata--aattcattcaacttcacgggcaacaataaattataaaaga |
27434051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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