View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3781_low_33 (Length: 251)

Name: NF3781_low_33
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3781_low_33
NF3781_low_33
[»] chr5 (3 HSPs)
chr5 (1-241)||(34543114-34543349)
chr5 (129-189)||(24406564-24406624)
chr5 (126-230)||(26526511-26526614)
[»] chr7 (3 HSPs)
chr7 (126-230)||(6328201-6328304)
chr7 (126-170)||(30215850-30215894)
chr7 (126-230)||(9506869-9506972)
[»] chr1 (3 HSPs)
chr1 (126-230)||(32947618-32947721)
chr1 (126-219)||(11080999-11081091)
chr1 (129-193)||(8050483-8050547)
[»] chr8 (2 HSPs)
chr8 (128-230)||(28183738-28183839)
chr8 (130-230)||(11109884-11109983)
[»] chr4 (1 HSPs)
chr4 (151-200)||(48391712-48391761)
[»] chr2 (3 HSPs)
chr2 (160-230)||(22999107-22999176)
chr2 (129-230)||(40630196-40630296)
chr2 (150-194)||(1910823-1910867)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34543349 - 34543114
Alignment:
Q  1 ttgagtttttagcatgtatatataaataaataatggtagagttgtaaacttgactatggaataaaaacatatctaatgttaaagaagcgtgtgcatttcc 100  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34543349 ttgagtttttagcatgtatatataaataa----tggtagagttgtaaacttgactatggaataaaaacatatataatgttaaagaagcgtgtgcatttcc 34543254  T
Q  101 ccgccaattaaaacctttgaaaatatctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccc 200  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| || |  ||||||||||||||    
T  34543253 ccgccaattaaaacctttgaaaatgtctcataagtcctagctcaaccaacaaaaatattgaaattattaggttggacgtcatcatcggggttcgtacccc 34543154  T
Q  201 cgacacctccactttatgtttgtgagtttacgatacctttg 241  Q
    || ||||| ||||||||||||||||||||| ||||||||||    
T  34543153 cggcacct-cactttatgtttgtgagtttatgatacctttg 34543114  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 24406564 - 24406624
Alignment:
Q  129 cataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggg 189  Q
    |||||||| |||||||||  ||||||||  |||||||||||||| |||||| |||| ||||    
T  24406564 cataagtcatagctcaactgacaaaaatgctaaaattattaggccggacgtcatgattggg 24406624  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 26526511 - 26526614
Alignment:
Q  126 tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga 225  Q
    |||||||||||||||||||||   ||||||||   ||||| |||||| | |||| ||||| | |||||| || || |  ||||||||||||||| |||||    
T  26526511 tctcataagtcttagctcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggt-acctccactttatgtgtgtga 26526609  T
Q  226 gttta 230  Q
    |||||    
T  26526610 gttta 26526614  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 6328304 - 6328201
Alignment:
Q  126 tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga 225  Q
    |||||||||||||||||||||   ||||||| | |||||| ||||| ||||||| |||||| ||||||| | |||||| ||||||||||||||| |||||    
T  6328304 tctcataagtcttagctcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcg-aaccccgatacctccactttatgtgtgtga 6328206  T
Q  226 gttta 230  Q
    |||||    
T  6328205 gttta 6328201  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 30215894 - 30215850
Alignment:
Q  126 tctcataagtcttagctcaaccaacaaaaatattaaaattattag 170  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||    
T  30215894 tctcataagtcatagctcaactaacaaaaatattaaaattgttag 30215850  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 9506972 - 9506869
Alignment:
Q  126 tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga 225  Q
    ||||||||||| ||||| |||  |||||||||| |||||| |||||| |||| | ||||| | |||||| | | |||  ||||||||||| ||| |||||    
T  9506972 tctcataagtcctagcttaactgacaaaaatatcaaaattgttaggccggacatcatgaccgaggttcg-aactccggtacctccactttgtgtgtgtga 9506874  T
Q  226 gttta 230  Q
    |||||    
T  9506873 gttta 9506869  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 32947618 - 32947721
Alignment:
Q  126 tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtga 225  Q
    ||||||||||| |||||||||  |||||||| |||||||| |||||| | ||||  |||| || ||||| | |||||||| ||||||||||||| |||||    
T  32947618 tctcataagtcctagctcaactgacaaaaatgttaaaattgttaggccgaacgtcttgaccggagttcg-aaccccgacatctccactttatgtgtgtga 32947716  T
Q  226 gttta 230  Q
    |||||    
T  32947717 gttta 32947721  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 11081091 - 11080999
Alignment:
Q  126 tctcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgt 219  Q
    |||||||||||||| ||||||   ||||||| || |||||  ||||| |||||||||||| |||||||  | |||||| |||||||||||||||    
T  11081091 tctcataagtcttaactcaactggcaaaaatgttgaaattgctaggccggacgttatgaccggggttc-aaaccccgatacctccactttatgt 11080999  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 8050483 - 8050547
Alignment:
Q  129 cataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttc 193  Q
    ||||||||||||||||||| |||||||| |  ||||| |||||| | | |||||||| |||||||    
T  8050483 cataagtcttagctcaaccgacaaaaatgtcgaaattgttaggccgaatgttatgaccggggttc 8050547  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 28183839 - 28183738
Alignment:
Q  128 tcataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagt 227  Q
    |||||||||||||||||||  ||||||||    |||||||||||| |||  |  |||| |||||||| ||||| |||||||||||||| ||| |||||||    
T  28183839 tcataagtcttagctcaactgacaaaaatgccgaaattattaggccggatttcttgaccggggttcgaacccc-gacacctccactttgtgtgtgtgagt 28183741  T
Q  228 tta 230  Q
    |||    
T  28183740 tta 28183738  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 11109983 - 11109884
Alignment:
Q  130 ataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagttt 229  Q
    ||||||||||||||||||   ||||||   |||||| ||| ||||||||| |||||||||||||| | |||||  | ||||||||||||| ||| |||||    
T  11109983 ataagtcttagctcaaccggtaaaaatgccaaaattgttaagctggacgtcatgactggggttcg-aaccccggtatctccactttatgtgtgttagttt 11109885  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 48391712 - 48391761
Alignment:
Q  151 aaaaatattaaaattattaggctggacgttatgactggggttcgtacccc 200  Q
    |||||||| |||||| ||||||||||||| |||||||||||||| |||||    
T  48391712 aaaaatatcaaaattgttaggctggacgtcatgactggggttcgaacccc 48391761  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 22999107 - 22999176
Alignment:
Q  160 aaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagttta 230  Q
    |||||| |||| | |||||| ||||| |||||||| ||||| |||||||||||||| ||| ||||||||||    
T  22999107 aaaattgttagtccggacgtcatgaccggggttcgaacccc-gacacctccactttgtgtgtgtgagttta 22999176  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 40630296 - 40630196
Alignment:
Q  129 cataagtcttagctcaaccaacaaaaatattaaaattattaggctggacgttatgactggggttcgtacccccgacacctccactttatgtttgtgagtt 228  Q
    |||||||||||| |||||| |||||||| | ||||||||||||| | |  |  |||| ||||||| || |||| ||||||||||||| | | ||||||||    
T  40630296 cataagtcttagttcaaccgacaaaaatgtcaaaattattaggccgaaaatcttgaccggggttc-taacccctacacctccactttgtttgtgtgagtt 40630198  T
Q  229 ta 230  Q
    ||    
T  40630197 ta 40630196  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 1910823 - 1910867
Alignment:
Q  150 caaaaatattaaaattattaggctggacgttatgactggggttcg 194  Q
    ||||||| ||||||||||||||| ||| |||||||| ||||||||    
T  1910823 caaaaatgttaaaattattaggccggatgttatgaccggggttcg 1910867  T

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