View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3781_low_38 (Length: 246)

Name: NF3781_low_38

Description: NF3781

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3781_low_38

[»] chr7 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 228; E-Value: 1e-126

Query Start/End: Original strand, 1 - 228

Target Start/End: Original strand, 34337768 - 34337995

Alignment:

Q	1	cacaccttagctacattttggcaaaagtcactttggtgccaaaactttaaacagagaagatagtatgaagcagatgcataccttgcaacataagtagcgt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34337768	cacaccttagctacattttggcaaaagtcactttggtgccaaaactttaaacagagaagatagtatgaagcagatgcataccttgcaacataagtagcgt	34337867	T

Q	101	tcccaattaaagcaaagagaaacatcaaaggattgaggccctacaaatcataaaagatttcaaactcttcgcggtatgcatgaataccactttgtgcaac	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34337868	tcccaattaaagcaaagagaaacatcaaaggattgaggccctacaaatcataaaagatttcaaactcttcgcggtatgcatgaataccactttgtgcaac	34337967	T

Q	201	tagaataaaatatcttttactgctaact	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34337968	tagaataaaatatcttttactgctaact	34337995	T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 76 - 134

Target Start/End: Original strand, 9072183 - 9072241

Alignment:

Q	76	gcataccttgcaacataagtagcgttcccaattaaagcaaagagaaacatcaaaggatt	134	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|
T	9072183	gcataccttgctacataagtagtattcccaattaaagcaaagagaaacattagaggatt	9072241	T

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