View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_41 (Length: 237)
Name: NF3781_low_41
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 42168650 - 42168429
Alignment:
| Q |
9 |
gtactttactcaatttaagtggtccatctttttacacaacttttttcatttaagtaaatccatggcttattacctatggtggagtattaaattaatagag |
108 |
Q |
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| T |
42168650 |
gtactttactcaatttaagtggtccatcttttttcacaacttttttcatttaagtaactccatggcttattacctatggtggagtattaaattaatagag |
42168551 |
T |
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| Q |
109 |
caatgtaatacaaacgtaattgattcatgtactaagatatttcaa-cttcttgatt-aca-------agttagaaatttagttaaaaaggaataacttat |
199 |
Q |
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| T |
42168550 |
caatgtaatacaaacgtaattcattcatgtactaagatatttcaagtttcatctttgacatttgtttatttagaaatttagttaaaaaggaataacttat |
42168451 |
T |
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| Q |
200 |
cttatttattgaatatacttta |
221 |
Q |
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|||||||||||||||| ||||| |
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| T |
42168450 |
cttatttattgaatatgcttta |
42168429 |
T |
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