View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_47 (Length: 211)
Name: NF3781_low_47
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 24223683 - 24223865
Alignment:
| Q |
13 |
aagaatataataaattt-agattccaagggtccttcatggttacccacacgatggtttctcaaatttgctgctatggagggnnnnnnnnnatcccttgca |
111 |
Q |
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| T |
24223683 |
aagaaaataataaattttagattccaagggtccttcatggttacccacacgatggtttctcaaatttgctgccatggagg-tttttttttatcccttgca |
24223781 |
T |
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| Q |
112 |
tgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtg-aagagaagcatctgatctgagatatagtctctaa |
194 |
Q |
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| T |
24223782 |
tgcatacagcatggtgtggaagcatacttaattaattttgatgaaagtgaaaaagaggcatctgatctgagatatagtttctaa |
24223865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 24247533 - 24247603
Alignment:
| Q |
102 |
atcccttgcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtgaagagaagcatc |
172 |
Q |
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| T |
24247533 |
atcccatgcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtgacgtgaagcatc |
24247603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 24222744 - 24222813
Alignment:
| Q |
102 |
atcccttgcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtgaagagaagcat |
171 |
Q |
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| T |
24222744 |
atcccatgcatgcatacaacatggtgtggaagcatacttaattaattttgatgaaagtgacaagaagcat |
24222813 |
T |
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