View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_49 (Length: 208)
Name: NF3781_low_49
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_49 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 27443432 - 27443225
Alignment:
| Q |
1 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaaaagga |
100 |
Q |
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| T |
27443432 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaagagga |
27443333 |
T |
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| Q |
101 |
atgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttttgcaggcttgtgaatattttctctttcgattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443332 |
atgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggcttgatgaatcttgttttgcaggcttgtgaatattttctctttcgattg |
27443233 |
T |
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| Q |
201 |
tagtttgc |
208 |
Q |
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|||||||| |
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| T |
27443232 |
tagtttgc |
27443225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 27221408 - 27221618
Alignment:
| Q |
1 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaa |
96 |
Q |
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|||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||||| |
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| T |
27221408 |
taagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccatagaag |
27221504 |
T |
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| Q |
97 |
aggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaatattttctcttt |
194 |
Q |
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| T |
27221505 |
aggaatgcaaaactaaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatattttctcttt |
27221604 |
T |
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| Q |
195 |
cgattgtagtttgc |
208 |
Q |
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| T |
27221605 |
cgattgtagtttgc |
27221618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 27215446 - 27215633
Alignment:
| Q |
1 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaa |
96 |
Q |
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|||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||| ||||| |
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| T |
27215446 |
taagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccgtagaag |
27215542 |
T |
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| Q |
97 |
aggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaatat |
185 |
Q |
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| T |
27215543 |
aggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat |
27215633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 27433251 - 27433368
Alignment:
| Q |
70 |
tgagtagtgatatatat-accatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttt |
168 |
Q |
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|||||| |||||||||| ||||||||| |||||||| || |||| ||||| ||||||| | ||| | ||||||||||||| ||||||||||||||||| |
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| T |
27433251 |
tgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaatcttgttt |
27433350 |
T |
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| Q |
169 |
tgcaggcttgtgaatatt |
186 |
Q |
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| T |
27433351 |
tgcaggcttgtgaatatt |
27433368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 27208155 - 27208225
Alignment:
| Q |
58 |
aattaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
128 |
Q |
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| T |
27208155 |
aattaatgtagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
83 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
128 |
Q |
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| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
83 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
128 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
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