View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_5 (Length: 477)
Name: NF3781_low_5
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 119 - 460
Target Start/End: Complemental strand, 14355724 - 14355383
Alignment:
| Q |
119 |
ggtatatctagttcaggttctaaagaggatgcataacctaaattacagtcaacatgaataacatattcttcctcttcatcaaaatcggatatatccatgt |
218 |
Q |
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| T |
14355724 |
ggtatatctagttcaggttctaaagaggatgcataacctaaattacagtcaacatgaataacatattcttcctcttcatcaaaatcggatatatccatgt |
14355625 |
T |
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| Q |
219 |
tagatatatcaagaattggtatgggaacaacatattcatgaatcggttcaagaacagatgtttgactgactaaagtatcaagtgcatcatgtaatgaatt |
318 |
Q |
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| T |
14355624 |
tagatatatcaagaattggtatgggaacaacatattcatgaatcggttcaagaacagatgtttgactgactaaagtatcaagtgcatcatgtaatgaatt |
14355525 |
T |
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| Q |
319 |
ctctggttgtgctgcatttataggttgaactacatgtgtttggtcttatgatgttgaagtactagcatcatgtaaagaattgattggaagggagaatctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14355524 |
ctctggttgtgctgcatttataggttgaactacatgtgtttggtcttctgatgttgaagtactagcatcatgtaaagaattgattagaagggagaatctg |
14355425 |
T |
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| Q |
419 |
cttgaaatttggatgaataatcatggttgtacatgtttcaaa |
460 |
Q |
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| T |
14355424 |
cttgaaatttggatgaataatcatggttgtacatgtttcaaa |
14355383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 14355856 - 14355757
Alignment:
| Q |
24 |
tcaaatatgttctcaaaaacctctctcaatacaatagaatccagtaaaagggtaggcggtggtggaacattgatgg-ttgagatgcatggattgaaggta |
122 |
Q |
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| T |
14355856 |
tcaaatatgttctcaaaaacctctctcaatacaatagaatccagtaaaagggtaggcggtggtggaacattgatggtttgaggtgcatggattgaaggta |
14355757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 14355357 - 14355293
Alignment:
| Q |
396 |
aattgattggaagggagaatctgcttgaaatttggatgaataatcatggttgtacatgtttcaaa |
460 |
Q |
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| T |
14355357 |
aattgattggaagggagaatctgcatgaaatttggatgaataatcatggttgtacatgtttcaaa |
14355293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14355891 - 14355852
Alignment:
| Q |
1 |
gaactagatcatttctaaaagggtcaaatatgttctcaaa |
40 |
Q |
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| T |
14355891 |
gaactagatcatttctaaaagggtcaaatatgttctcaaa |
14355852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 10331423 - 10331351
Alignment:
| Q |
166 |
gtcaacatgaataacatattcttcctcttcatcaaaatcggatatatccatgttagatatatcaagaattggt |
238 |
Q |
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| T |
10331423 |
gtcaatatgagtaacatgttcatcttcctcatcagaatctaatatatccatgttagatatatcaagaattggt |
10331351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 22536286 - 22536339
Alignment:
| Q |
24 |
tcaaatatgttctcaaaaacctctctcaatacaatagaatccagtaaaagggta |
77 |
Q |
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||||||||||||||| | |||||| | |||| ||||||||| |||||||||||| |
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| T |
22536286 |
tcaaatatgttctcacatacctcttttaatataatagaatctagtaaaagggta |
22536339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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