View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3781_low_6 (Length: 476)

Name: NF3781_low_6
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3781_low_6
NF3781_low_6
[»] scaffold0154 (1 HSPs)
scaffold0154 (22-348)||(13570-13894)
[»] scaffold0182 (1 HSPs)
scaffold0182 (359-476)||(8764-8881)
[»] chr8 (10 HSPs)
chr8 (359-476)||(31448747-31448864)
chr8 (358-476)||(4241962-4242079)
chr8 (359-476)||(4237224-4237340)
chr8 (359-473)||(43301626-43301740)
chr8 (391-475)||(25361636-25361719)
chr8 (358-475)||(8330261-8330376)
chr8 (359-445)||(37772844-37772928)
chr8 (359-475)||(42973190-42973305)
chr8 (358-475)||(21959480-21959595)
chr8 (397-475)||(34817656-34817736)
[»] chr5 (17 HSPs)
chr5 (358-476)||(41997737-41997855)
chr5 (358-476)||(557791-557908)
chr5 (358-476)||(42002528-42002646)
chr5 (358-475)||(562562-562678)
chr5 (359-476)||(12044014-12044131)
chr5 (359-476)||(32460427-32460544)
chr5 (358-476)||(36941146-36941263)
chr5 (359-476)||(36936393-36936509)
chr5 (359-471)||(3666972-3667083)
chr5 (358-475)||(21322920-21323035)
chr5 (397-475)||(13300406-13300484)
chr5 (359-475)||(31732647-31732760)
chr5 (361-445)||(14232586-14232669)
chr5 (358-445)||(24435063-24435148)
chr5 (419-468)||(36949790-36949839)
chr5 (358-454)||(23976318-23976413)
chr5 (388-445)||(32287283-32287340)
[»] chr3 (11 HSPs)
chr3 (358-476)||(8884265-8884383)
chr3 (358-475)||(8070773-8070889)
chr3 (359-476)||(8889011-8889128)
chr3 (358-476)||(3673661-3673778)
chr3 (358-476)||(3034739-3034856)
chr3 (358-476)||(3693715-3693832)
chr3 (391-451)||(35455798-35455858)
chr3 (391-475)||(10585096-10585179)
chr3 (387-443)||(20496185-20496241)
chr3 (419-475)||(45903518-45903574)
chr3 (358-445)||(28126312-28126398)
[»] chr2 (6 HSPs)
chr2 (358-473)||(10159600-10159715)
chr2 (358-451)||(30659276-30659369)
chr2 (359-476)||(35602693-35602804)
chr2 (359-475)||(6296796-6296910)
chr2 (413-475)||(28856182-28856244)
chr2 (357-451)||(30629964-30630057)
[»] chr7 (17 HSPs)
chr7 (359-476)||(9649844-9649960)
chr7 (359-476)||(47102630-47102742)
chr7 (358-474)||(13343310-13343425)
chr7 (368-473)||(23866819-23866924)
chr7 (358-475)||(10499010-10499126)
chr7 (358-475)||(10504039-10504155)
chr7 (361-475)||(13346249-13346362)
chr7 (359-475)||(27257315-27257429)
chr7 (359-476)||(8077103-8077223)
chr7 (358-460)||(40997726-40997827)
chr7 (358-475)||(40864280-40864397)
chr7 (387-462)||(19641399-19641477)
chr7 (358-445)||(40863959-40864044)
chr7 (397-475)||(18324395-18324473)
chr7 (360-446)||(10531748-10531833)
chr7 (359-407)||(7839501-7839548)
chr7 (415-459)||(18330328-18330372)
[»] chr4 (9 HSPs)
chr4 (359-476)||(13520869-13520985)
chr4 (360-476)||(31297409-31297524)
chr4 (359-475)||(3992653-3992767)
chr4 (358-461)||(7899837-7899938)
chr4 (358-475)||(34561503-34561618)
chr4 (358-427)||(39320701-39320769)
chr4 (359-476)||(26187705-26187821)
chr4 (365-475)||(15799036-15799138)
chr4 (397-473)||(41817883-41817959)
[»] chr1 (7 HSPs)
chr1 (358-476)||(3095184-3095301)
chr1 (359-457)||(14204447-14204546)
chr1 (362-469)||(17213032-17213138)
chr1 (413-475)||(40232324-40232386)
chr1 (398-475)||(33055877-33055954)
chr1 (359-421)||(8273059-8273120)
chr1 (362-468)||(27307360-27307463)
[»] scaffold0045 (1 HSPs)
scaffold0045 (359-476)||(84003-84120)
[»] scaffold0628 (2 HSPs)
scaffold0628 (358-476)||(5761-5878)
scaffold0628 (358-476)||(7529-7646)
[»] scaffold0070 (2 HSPs)
scaffold0070 (358-475)||(59504-59618)
scaffold0070 (358-475)||(63706-63820)
[»] scaffold0041 (1 HSPs)
scaffold0041 (359-475)||(34605-34719)
[»] chr6 (7 HSPs)
chr6 (358-467)||(2881728-2881837)
chr6 (358-467)||(2862425-2862534)
chr6 (391-466)||(6111645-6111721)
chr6 (359-476)||(2759139-2759255)
chr6 (359-409)||(24588522-24588571)
chr6 (387-468)||(29157094-29157174)
chr6 (359-451)||(15509402-15509493)
[»] scaffold0060 (2 HSPs)
scaffold0060 (413-471)||(46909-46967)
scaffold0060 (358-475)||(51795-51910)
[»] scaffold0008 (1 HSPs)
scaffold0008 (368-445)||(257762-257838)
[»] scaffold0484 (1 HSPs)
scaffold0484 (391-475)||(8011-8094)
[»] scaffold0061 (1 HSPs)
scaffold0061 (413-475)||(48894-48956)
[»] scaffold0017 (1 HSPs)
scaffold0017 (413-475)||(149678-149740)
[»] scaffold0015 (1 HSPs)
scaffold0015 (358-475)||(213253-213368)


Alignment Details
Target: scaffold0154 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 13894 - 13570
Alignment:
Q  22 ttatgctttgttgctgaaaaacacgtagatcatgggaccctattaaagatagtatcagtggataattatgttttcattaataatatgatttttagaggat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13894 ttatgctttgttgctgaaaaacacgtagatcatgggaccctattaaagatagtatcagtggataattatgttttcattaataatatgatttttagtggat 13795  T
Q  122 atcttttatgcccgatcgagaagacactaacctatcatgtgttttgtggggttcaaatagacaacaaattctctttaagagttttagtacaattgcatca 221  Q
    ||||| |||||||||  |   ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  13794 atcttctatgcccgactgg--agacactaacctatcgtgtgtcttgtggggttcaaatagacagcaaattctctttaagagttttaggacgattgcatca 13697  T
Q  222 aattcagattcgaagttgagatattggtttaactagaaaagatgtgtatcatattatctaggcacttgtggtgcactgataatatgcttaaaataacaat 321  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  13696 aattcagattcgaagttgagacattggtttaactagaaaagatgtgtatcatattatctaagcacttgtggtacactaataatatgcttaaaataacaat 13597  T
Q  322 gttttatgtctatactttatactaaga 348  Q
    |||||||||||||||||||||||||||    
T  13596 gttttatgtctatactttatactaaga 13570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 8764 - 8881
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  8764 tgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaaatcccac 8863  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  8864 atcggatggaacacacac 8881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 31448747 - 31448864
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  31448747 tgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaagtcccac 31448846  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  31448847 atcggatggaacacacac 31448864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 358 - 476
Target Start/End: Original strand, 4241962 - 4242079
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  4241962 ttgttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtccca 4242060  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  4242061 catcggatggaacacacac 4242079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 4237224 - 4237340
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||    
T  4237224 tgttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtcccac 4237322  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  4237323 atcggatggaacacacac 4237340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 43301626 - 43301740
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||| || |||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||| ||| ||    
T  43301626 tgttggaagatttgtggaaattgagttaaaaagactaaacacaaatttccatcttgggtagaactagtgttgtgtgaattgaaaaaagtggaagtcctac 43301725  T
Q  459 atcggatggaacaca 473  Q
    |||||||||||||||    
T  43301726 atcggatggaacaca 43301740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 25361636 - 25361719
Alignment:
Q  391 gactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    ||||| ||||||||||||||  |||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||| ||||||    
T  25361636 gactaaacacaaattcccataatgggtagaactagtgtagtgtgaattg-aaaaagtggaagtcccacatcggatggatcacaca 25361719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 8330261 - 8330376
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||  | |||| ||||||||||| || || |||||    
T  8330261 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagcatagtgtgaattgaaaaaagtgaaagtccca 8330358  T
Q  458 catcggatggaacacaca 475  Q
    ||||||||||| ||||||    
T  8330359 catcggatggatcacaca 8330376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 37772928 - 37772844
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    ||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| |||||||||||    
T  37772928 tgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaa 37772844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 42973305 - 42973190
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||||||   ||||||| |||||| ||||| ||||||||||||| ||| |  |||| |||||||| || | || |||||| ||||| || |||    
T  42973305 tgttggaacatgtgcaaaaattgagttaaaa-gactatacacaaattcccacgttagaaagaattagtgttgcgtgacttaaaaaaagtggaagtctcac 42973207  T
Q  459 atcggatggaacacaca 475  Q
    ||| |||| ||||||||    
T  42973206 atcagatgaaacacaca 42973190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 21959595 - 21959480
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| ||| |||||||| |  ||  ||||| |||||||||||||   ||||||||| || ||| |||| ||||||||||| ||||| || ||    
T  21959595 ttgttggaacatatgttgaaattgagt--aattgactaaacacaaattcccacaatgggtagaattaatgtagtgtgaattgaaaaaagtggaagtctca 21959498  T
Q  458 catcggatggaacacaca 475  Q
    ||||  ||||| ||||||    
T  21959497 catcaaatggatcacaca 21959480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 34817656 - 34817736
Alignment:
Q  397 acacaaattcccatgttgggtagaactagtgttgtgtaaattg--aaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||||||||||||   ||| |||||||||||| ||||||||||  |||||| ||||| | | |||||||||||| ||||||    
T  34817656 acacaaattcccacaatggatagaactagtgtagtgtaaattgaaaaaaaaatggaagttctacatcggatggatcacaca 34817736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 41997855 - 41997737
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  41997855 ttgttggaacatgtgtgaaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaagtccca 41997756  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  41997755 catcggatggaacacacac 41997737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 557908 - 557791
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  557908 ttgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtccca 557810  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  557809 catcggatggaacacacac 557791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 42002646 - 42002528
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  42002646 ttgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcatatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaagtccca 42002547  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  42002546 catcggatggaacacacac 42002528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 562678 - 562562
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  562678 ttgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtccca 562580  T
Q  458 catcggatggaacacaca 475  Q
    ||||||||||||||||||    
T  562579 catcggatggaacacaca 562562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 12044014 - 12044131
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |    
T  12044014 tgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtgaaagtccctc 12044113  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  12044114 atcggatggaacacacac 12044131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 32460427 - 32460544
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||||||| |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||    
T  32460427 tgttggaacatgtgttgaaattgagttaaaaagactaatcacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaagtaccac 32460526  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  32460527 atcggatggaacacacac 32460544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 358 - 476
Target Start/End: Original strand, 36941146 - 36941263
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||| |||||    
T  36941146 ttgttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttctgtgaattg-aaaaagtggaagtccca 36941244  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  36941245 catcggatggaacacacac 36941263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 36936393 - 36936509
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| || |||    
T  36936393 tgttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaacagtggaagtctcac 36936491  T
Q  459 atcggatggaacacacac 476  Q
    |||| |||||||||||||    
T  36936492 atcgaatggaacacacac 36936509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 359 - 471
Target Start/End: Complemental strand, 3667083 - 3666972
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| | |||||||||| |||||||||  ||||||| |||||| ||||||||||||||||||||||  ||||| ||||||    
T  3667083 tgttggaacatgtgtggaaattgagt-aaaaagactaaacacaaattttcatgttgtgtagaaatagtgttgtgtaaattgaaaaaggtggaagtcccac 3666985  T
Q  459 atcggatggaaca 471  Q
    |||||||||||||    
T  3666984 atcggatggaaca 3666972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 21322920 - 21323035
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||||||||| ||||| |||||    
T  21322920 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagtccca 21323017  T
Q  458 catcggatggaacacaca 475  Q
    ||||||||||| ||||||    
T  21323018 catcggatggatcacaca 21323035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 13300406 - 13300484
Alignment:
Q  397 acacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||||||||||||   |||||||||||||||| |||| ||||||||||| ||||| ||||||||| |||||| ||||||    
T  13300406 acacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagtcccacatcagatggatcacaca 13300484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 31732760 - 31732647
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   ||| |||||||||||| |||| ||||||||||| ||||| ||||||    
T  31732760 tgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatggatagaactagtgtagtgtgaattgaaaaaaatggaagtcccac 31732663  T
Q  459 atcggatggaacacaca 475  Q
    ||| |||||| ||||||    
T  31732662 atc-gatggatcacaca 31732647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 445
Target Start/End: Original strand, 14232586 - 14232669
Alignment:
Q  361 ttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    ||||||||  |||||||||||| ||||||| |||| ||||||||| |||  |||||||| |||||| |||||| |||||||||||    
T  14232586 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccacattgggtagcactagtattgtgtgaattgaaaaaa 14232669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 24435063 - 24435148
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| |||||||||||    
T  24435063 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaa 24435148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 468
Target Start/End: Complemental strand, 36949839 - 36949790
Alignment:
Q  419 gaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatgga 468  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||||||||    
T  36949839 gaactagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatgga 36949790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 454
Target Start/End: Original strand, 23976318 - 23976413
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatc 454  Q
    |||||||||||  ||||||| |||| | ||||| |||| || |||||||  || ||||||||||  |||||||||| ||||||||||| ||||||||    
T  23976318 ttgttggaacaaatgtggaatttgagtaaaaaatactaaacgcaaattcttat-ttgggtagaatcagtgttgtgtgaattgaaaaaagtggaaatc 23976413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 32287283 - 32287340
Alignment:
Q  388 aaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    |||||||| ||||||| || ||||||| |||||||||||||  ||| |||||||||||    
T  32287283 aaagactaaacacaaagtctcatgttgagtagaactagtgtgatgtgaattgaaaaaa 32287340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 8884383 - 8884265
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  8884383 ttgttggaacatgtgtggaaactgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaaatggaagtccca 8884284  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  8884283 catcggatggaacacacac 8884265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 8070889 - 8070773
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  8070889 ttgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaa-tggaagtccca 8070791  T
Q  458 catcggatggaacacaca 475  Q
    ||||||||||||||||||    
T  8070790 catcggatggaacacaca 8070773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 359 - 476
Target Start/End: Complemental strand, 8889128 - 8889011
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||    
T  8889128 tgttggaacatgtgtggaaactgagttaaaaagactaaacacaaattcccatgttgggtagaattagtgttgtgtgaattgaaaaaagtggaagtcccac 8889029  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  8889028 atcggatggaacacacac 8889011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 3673778 - 3673661
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  3673778 ttgttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtccca 3673680  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  3673679 catcggatggaacacacac 3673661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 3034856 - 3034739
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  3034856 ttgttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtccca 3034758  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||| ||||||    
T  3034757 catcggatggaatacacac 3034739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 3693832 - 3693715
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||| |||||    
T  3693832 ttgttggaacatgtgtggaaattgagttaaacagactaaacacaaattctcatgttgggtagaactaatgttgtgtgaattg-aaaaagtggaagtccca 3693734  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  3693733 catcggatggaacacacac 3693715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 35455798 - 35455858
Alignment:
Q  391 gactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaa 451  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  35455798 gactaaacacaaattcatatgttgggtagaactagtgttgtgtaaattgaaaaaagtggaa 35455858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 10585096 - 10585179
Alignment:
Q  391 gactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    ||||| |||||||||||||   |||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||| ||||||    
T  10585096 gactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg-aaaaagtggaagtcccacatcggatggatcacaca 10585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 20496185 - 20496241
Alignment:
Q  387 aaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaa 443  Q
    ||||||||| ||||||| |||||| || |||||||||||||| ||||||||||||||    
T  20496185 aaaagactaaacacaaagtcccatattaggtagaactagtgtggtgtaaattgaaaa 20496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 45903518 - 45903574
Alignment:
Q  419 gaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||||||||| |||| ||||||||||||||||| || |||||||||| || ||||||    
T  45903518 gaactagtgtagtgtgaattgaaaaaattggaagtctcacatcggatagatcacaca 45903574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 445
Target Start/End: Complemental strand, 28126398 - 28126312
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    |||||| |||||||||| ||||||| |||||| || || ||||||| |   |||||||||||||| | |||||||| |||||||||||    
T  28126398 ttgttgaaacatgtgtgaaaattgagttaaaa-gattaaacacaaaattttatgttgggtagaaccaatgttgtgtgaattgaaaaaa 28126312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 10159600 - 10159715
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||    
T  10159600 ttgttggaacatctgtggaaattgagttaaaaagactaaacacaaattcccatgttaggtagaactagtgttgtgtgaattgaaaaaagtggaagtccca 10159699  T
Q  458 catcggatggaacaca 473  Q
    ||||||||||||||||    
T  10159700 catcggatggaacaca 10159715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 30659369 - 30659276
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaa 451  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  30659369 ttgttggaacatgtgtggaaattgagttaaaaagactaaacaaaaactcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaa 30659276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 359 - 476
Target Start/End: Complemental strand, 35602804 - 35602693
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||       |||||||||| ||||||||||| ||||| || |||    
T  35602804 tgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattctcatgttggg------cagtgttgtgtgaattgaaaaaagtggaagtctcac 35602711  T
Q  459 atcggatggaacacacac 476  Q
    ||||||||||||||||||    
T  35602710 atcggatggaacacacac 35602693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 6296796 - 6296910
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||||||||| |||||  |||||    
T  6296796 tgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagacccac 6296893  T
Q  459 atcggatggaacacaca 475  Q
    |||||||||| ||||||    
T  6296894 atcggatggatcacaca 6296910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 28856244 - 28856182
Alignment:
Q  413 tgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||||||||||| ||| |||| ||||||||||| ||||| ||||||||| |||||| ||||||    
T  28856244 tgggtagaactaatgtagtgtgaattgaaaaaagtggaagtcccacatcagatggatcacaca 28856182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 451
Target Start/End: Complemental strand, 30630057 - 30629964
Alignment:
Q  357 gttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaa 451  Q
    |||||||||||||||||||||| | | |||||| || |||||| |||||| ||| ||| || ||| |||||| |||| ||||||||||| |||||    
T  30630057 gttgttggaacatgtgtggaaagtaagttaaaa-gattagacaaaaattcgcattttgcgtggaattagtgtagtgtgaattgaaaaaaatggaa 30629964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 9649844 - 9649960
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||    
T  9649844 tgttggaacatgtgtggaaattgagttaaaa-gactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaagttccac 9649942  T
Q  459 atcggatggaacacacac 476  Q
    |||||||| || ||||||    
T  9649943 atcggatgaaatacacac 9649960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 359 - 476
Target Start/End: Complemental strand, 47102742 - 47102630
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||     ||||||||||||||||||||| ||||| |||||     
T  47102742 tgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtag-----gtgttgtgtaaattgaaaaaagtggaagtcccat 47102648  T
Q  459 atcggatggaacacacac 476  Q
    | ||||||||||||||||    
T  47102647 agcggatggaacacacac 47102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 358 - 474
Target Start/End: Original strand, 13343310 - 13343425
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||| ||| | |||||||||  || ||||||||||||||||||||||| ||||||||||| ||||  ||||     
T  13343310 ttgttggaacatgtgtggaaattgaattaaaa-gacaaaacacaaattttcacgttgggtagaactagtgttgtgtgaattgaaaaaagtggatgtcccg 13343408  T
Q  458 catcggatggaacacac 474  Q
    |||||||||||||||||    
T  13343409 catcggatggaacacac 13343425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 23866924 - 23866819
Alignment:
Q  368 atgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaa-aaaattggaaatcccacatcggatg 466  Q
    ||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||| |||||    
T  23866924 atgtgtgaaaattgagttaaaa-gactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaaagtggaagtcccacattggatg 23866826  T
Q  467 gaacaca 473  Q
    |||||||    
T  23866825 gaacaca 23866819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 10499010 - 10499126
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||| ||||| ||| ||||| | | ||  ||||||||||||||||||| ||||||||||| ||||| ||||     
T  10499010 ttgttggaacatgtgtggaaattgaattaaaa-gactaaacataaatttcaacgtaaggtagaactagtgttgtgtgaattgaaaaaagtggaagtcccg 10499108  T
Q  458 catcggatggaacacaca 475  Q
     || ||||||||||||||    
T  10499109 aattggatggaacacaca 10499126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 10504039 - 10504155
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||| ||||| ||| ||||| | | ||  ||||||||||||||||||| ||||||||||| ||||| ||||     
T  10504039 ttgttggaacatgtgtggaaattgaattaaaa-gactaaacataaatttcaacgtaaggtagaactagtgttgtgtgaattgaaaaaagtggaagtcccg 10504137  T
Q  458 catcggatggaacacaca 475  Q
     || ||||||||||||||    
T  10504138 aattggatggaacacaca 10504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 13346249 - 13346362
Alignment:
Q  361 ttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacat 460  Q
    |||||||||||||||||||||| |||||| ||| | ||| |||||  || ||| ||||||||||||||||||| ||||||||||| |||| ||||| | |    
T  13346249 ttggaacatgtgtggaaattgaattaaaa-gacaaaacataaattttcacgtttggtagaactagtgttgtgtgaattgaaaaaaatggatatcccgcgt 13346347  T
Q  461 cggatggaacacaca 475  Q
     ||||||||||||||    
T  13346348 tggatggaacacaca 13346362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 27257429 - 27257315
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||||||||| ||||| ||||||    
T  27257429 tgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagtcccac 27257332  T
Q  459 atcggatggaacacaca 475  Q
    ||| |||||| ||||||    
T  27257331 atcagatggatcacaca 27257315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 476
Target Start/End: Complemental strand, 8077223 - 8077103
Alignment:
Q  359 tgttggaacatgtgtggaaattgactt---aaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcc 455  Q
    |||||||||||||||||||||||| ||   |||||||||| | ||||||||| ||||||||| |||| |||  ||||| ||||||||||   | || |      
T  8077223 tgttggaacatgtgtggaaattgagttaaaaaaaagactaaagacaaattcctatgttgggtggaaccagttctgtgtgaattgaaaaaggcgaaagttt 8077124  T
Q  456 cacatcggatggaacacacac 476  Q
    |||||||||||||||||||||    
T  8077123 cacatcggatggaacacacac 8077103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 460
Target Start/End: Original strand, 40997726 - 40997827
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||| |||| |||||||| |||||| ||||| | ||||||||| |  ||||||| ||||||||| |||| ||| ||||||| |||||||||||    
T  40997726 ttgttggaacaagtgtagaaattgagttaaaa-gactaaatacaaattcctacattgggtaaaactagtgtagtgtgaatcgaaaaaagtggaaatccca 40997824  T
Q  458 cat 460  Q
    |||    
T  40997825 cat 40997827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 40864280 - 40864397
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattg--aaaaaattggaaatcc 455  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| |||||  |||||| ||||| |||    
T  40864280 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaaaaatggaagtcc 40864377  T
Q  456 cacatcggatggaacacaca 475  Q
    || |||||||||| ||||||    
T  40864378 cagatcggatggatcacaca 40864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 462
Target Start/End: Complemental strand, 19641477 - 19641399
Alignment:
Q  387 aaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattg---aaaaaattggaaatcccacatcg 462  Q
    |||||| || ||||||||||||||||||||||||| ||||| ||||| |||||   |||||| |||||||| |||||||    
T  19641477 aaaagagtaaacacaaattcccatgttgggtagaattagtgctgtgtgaattggaaaaaaaagtggaaatctcacatcg 19641399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 40863959 - 40864044
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| |||||||||||    
T  40863959 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaa 40864044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 18324395 - 18324473
Alignment:
Q  397 acacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    ||||||| |||||  || ||||||||||||||||||||||||||||||| | ||| ||||| || |||| |||| ||||    
T  18324395 acacaaaatcccacatttggtagaactagtgttgtgtaaattgaaaaaaatagaagtcccatataggatagaactcaca 18324473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 10531748 - 10531833
Alignment:
Q  360 gttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaat 446  Q
    |||| ||| |||||| ||||||| |||||| ||||| |||||||||  || || ||||||||||||| |||||  ||||||||||||    
T  10531748 gttgaaacttgtgtgaaaattgaattaaaa-gactaaacacaaattttcacgtagggtagaactagttttgtgcgaattgaaaaaat 10531833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 7839548 - 7839501
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcc 407  Q
    |||| ||||||||||| |||||||||| ||||||||| |||||||||||    
T  7839548 tgttcgaacatgtgtgcaaattgactt-aaaagactaaacacaaattcc 7839501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 18330328 - 18330372
Alignment:
Q  415 ggtagaactagtgttgtgtaaattgaaaaaattggaaatcccaca 459  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||||    
T  18330328 ggtagaattagtgttgtgtgaattgaaaaaagtggaagtcccaca 18330372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 13520869 - 13520985
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||    
T  13520869 tgttggaacatgtgtggaaattgagttaaaa-gactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattgaaaaaagtggaagttccac 13520967  T
Q  459 atcggatggaacacacac 476  Q
    |||||||| || ||||||    
T  13520968 atcggatgaaatacacac 13520985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 360 - 476
Target Start/End: Original strand, 31297409 - 31297524
Alignment:
Q  360 gttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccaca 459  Q
    ||||||||||| ||||||||||| | |||||| ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| | | |||    
T  31297409 gttggaacatgcgtggaaattgagtaaaaaaggctaaacacaaattctcatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagttctaca 31297507  T
Q  460 tcggatggaacacacac 476  Q
    |||||||||||||||||    
T  31297508 tcggatggaacacacac 31297524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 3992653 - 3992767
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||| || ||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||||||||  ||||| ||||||    
T  3992653 tgttggaacatatgcggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtggtgtgaattgaaaaaggtggaagtcccac 3992750  T
Q  459 atcggatggaacacaca 475  Q
    |||||||||| ||||||    
T  3992751 atcggatggatcacaca 3992767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 461
Target Start/End: Original strand, 7899837 - 7899938
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||||||||| ||||| |||||    
T  7899837 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtggtgtgaattgaaaaaagtggaagtccca 7899934  T
Q  458 catc 461  Q
    ||||    
T  7899935 catc 7899938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 34561618 - 34561503
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |  ||  ||||| ||||||||||| ||  ||||||||| |||| | |||| ||||||||||| ||||| |||||    
T  34561618 ttgttggaacatttgtggaaattgagt--aattgactaaacacaaattcctataatgggtagaattagtatagtgtgaattgaaaaaagtggaagtccca 34561521  T
Q  458 catcggatggaacacaca 475  Q
    | ||||||||| ||||||    
T  34561520 cgtcggatggatcacaca 34561503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 39320769 - 39320701
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtg 427  Q
    ||||||||||||||||||||||||| || |||||| || | |||||||| ||||||||||||||||||||    
T  39320769 ttgttggaacatgtgtggaaattgagtt-aaaagattaaatacaaattcgcatgttgggtagaactagtg 39320701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 26187705 - 26187821
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||| |||||||||||||||||| || ||||||||  |||||||||| || || ||| |||| |||||||||   ||||||||||  || || ||||||    
T  26187705 tgttgaaacatgtgtggaaattgagtt-aaaagactttacacaaattctcacgtagggaagaattagtgttgtcagaattgaaaaatgtgaaattcccac 26187803  T
Q  459 atcggatggaacacacac 476  Q
    ||  |||||| |||||||    
T  26187804 atgagatggatcacacac 26187821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 475
Target Start/End: Original strand, 15799036 - 15799138
Alignment:
Q  365 aacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcgga 464  Q
    |||||||||||||||||| ||   ||||||| ||||||||||||||    |||||||||||||||||||  ||| |||||| ||||| | ||| ||  ||    
T  15799036 aacatgtgtggaaattgagtt---aagactaaacacaaattcccat----ggtagaactagtgttgtgt-gatttaaaaaagtggaagttccatataaga 15799127  T
Q  465 tggaacacaca 475  Q
    |||||||||||    
T  15799128 tggaacacaca 15799138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 473
Target Start/End: Complemental strand, 41817959 - 41817883
Alignment:
Q  397 acacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacaca 473  Q
    ||||||||||| |   ||||||||| || ||| |||| ||||||||||| ||||| | |||||||||||||| ||||    
T  41817959 acacaaattcctacaatgggtagaattaatgtagtgtgaattgaaaaaagtggaagttccacatcggatggatcaca 41817883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 3095301 - 3095184
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||| | |||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  3095301 ttgttggaacatgtgtggaaattgagttaaacaaactaaacacaaatttccatgttgggtagaactagtgttgtgtgaattg-aaaaagtggaagtccca 3095203  T
Q  458 catcggatggaacacacac 476  Q
    ||||||||| |||||||||    
T  3095202 catcggatgaaacacacac 3095184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 457
Target Start/End: Original strand, 14204447 - 14204546
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactaga--cacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccc 456  Q
    |||||||||||||||||||||||| | |||||| ||| |  |||||||||  ||||||||| ||||||||||||||| ||||||||||| ||||| ||||    
T  14204447 tgttggaacatgtgtggaaattgagt-aaaaagtctataaacacaaattcttatgttgggtggaactagtgttgtgtgaattgaaaaaagtggaagtccc 14204545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 469
Target Start/End: Original strand, 17213032 - 17213138
Alignment:
Q  362 tggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatc 461  Q
    ||||||||||||| ||||||| |||||| || |||||||||||| | || || |||||||| |||||||||| ||||||||||| | ||| | |||||||    
T  17213032 tggaacatgtgtgaaaattgagttaaaa-gattagacacaaatttctatcttaggtagaacaagtgttgtgtgaattgaaaaaagttgaagttccacatc 17213130  T
Q  462 ggatggaa 469  Q
    ||| ||||    
T  17213131 ggagggaa 17213138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 40232324 - 40232386
Alignment:
Q  413 tgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||||||||||| ||| |||| ||||||||||| ||||| |||||||||||||||| ||||||    
T  40232324 tgggtagaactaatgtagtgtgaattgaaaaaagtggaagtcccacatcggatggatcacaca 40232386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 33055954 - 33055877
Alignment:
Q  398 cacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    ||||||||||||   |||||||| ||||||  |||| ||||||||||| ||||| |||||||||||||||| ||||||    
T  33055954 cacaaattcccacaatgggtagacctagtgcagtgtgaattgaaaaaaatggaagtcccacatcggatggatcacaca 33055877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 8273059 - 8273120
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaa 421  Q
    ||||| |||||||||||||||||| ||||||| | || ||||||||||||| |||||||||||    
T  8273059 tgttgaaacatgtgtggaaattgagttaaaaa-aataaacacaaattcccacgttgggtagaa 8273120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 27307360 - 27307463
Alignment:
Q  362 tggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatc 461  Q
    ||||||||||||||| |||||  ||||| ||||| |||||||||||||  |||| |||| |||  ||||||| ||||||||||| ||||| ||| | ||     
T  27307360 tggaacatgtgtggatattgaggtaaaa-gactaaacacaaattcccacattggatagaccta--gttgtgtgaattgaaaaaagtggaagtcctatatt 27307456  T
Q  462 ggatgga 468  Q
    |||||||    
T  27307457 ggatgga 27307463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 359 - 476
Target Start/End: Complemental strand, 84120 - 84003
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||| | || || ||| ||    
T  84120 tgttggaacatgtgtggaaattggattaaaaagactaaacacaaatttctatgttgggtagaactagtgttgtgtgaattgaaaagagtgaaagtcctac 84021  T
Q  459 atcggatggaacacacac 476  Q
    || | |||||||||||||    
T  84020 attgaatggaacacacac 84003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 5878 - 5761
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||| ||| || ||||||||||||||||||| ||||||||||| || || |||||    
T  5878 ttgttggaacatgtgtggaaattgagttaaaat-actaaacacaaattctcatatttggtagaactagtgttgtgtgaattgaaaaaaatgaaagtccca 5780  T
Q  458 catcggatggaacacacac 476  Q
    ||||  |||||||||||||    
T  5779 catcaaatggaacacacac 5761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 7646 - 7529
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    ||||||||||||||||||||||||| |||||   |  | |||||||||| | |||| |||||||||||| |||||| |||| |||||| ||||| |||||    
T  7646 ttgttggaacatgtgtggaaattgagttaaagt-aggaaacacaaattctcttgtttggtagaactagtattgtgtgaatttaaaaaagtggaagtccca 7548  T
Q  458 catcggatggaacacacac 476  Q
    |||||||||||||||||||    
T  7547 catcggatggaacacacac 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 59618 - 59504
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||| ||||| |||||||||||    
T  59618 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg-aaaaagtggaaatccca 59522  T
Q  458 catcggatggaacacaca 475  Q
    ||||||||||| ||||||    
T  59521 catcggatggatcacaca 59504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 63820 - 63706
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||| ||||| |||||||||||    
T  63820 ttgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg-aaaaagtggaaatccca 63724  T
Q  458 catcggatggaacacaca 475  Q
    ||||||||||| ||||||    
T  63723 catcggatggatcacaca 63706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 34605 - 34719
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    ||||||||||| |||||||||||| |  ||  ||||| |||||||||||||   |||||||||||||||| |||| ||||||||||| ||||| ||||||    
T  34605 tgttggaacatatgtggaaattgagt--aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagtcccac 34702  T
Q  459 atcggatggaacacaca 475  Q
    |||| ||||| ||||||    
T  34703 atcgtatggatcacaca 34719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 467
Target Start/End: Original strand, 2881728 - 2881837
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaatt-gaaaaaattggaaatccc 456  Q
    ||||||||||||||||  ||||||| ||||||| ||||||||||||||| ||  || ||||||||||||||||||| ||||  |||||| ||||| |||     
T  2881728 ttgttggaacatgtgtaaaaattgagttaaaaa-actagacacaaattctcacatttggtagaactagtgttgtgtgaattaaaaaaaagtggaagtcct 2881826  T
Q  457 acatcggatgg 467  Q
    |||||||||||    
T  2881827 acatcggatgg 2881837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 467
Target Start/End: Original strand, 2862425 - 2862534
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaatt-gaaaaaattggaaatccc 456  Q
    ||||||||||||||||  ||||||| ||||||| ||||||||||||||| ||  || ||||||| ||||||||||| ||||  |||||| ||||| |||     
T  2862425 ttgttggaacatgtgtaaaaattgagttaaaaa-actagacacaaattctcacatttggtagaattagtgttgtgtgaattaaaaaaaagtggaagtcct 2862523  T
Q  457 acatcggatgg 467  Q
    |||||||||||    
T  2862524 acatcggatgg 2862534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 6111645 - 6111721
Alignment:
Q  391 gactagacacaaattcccatgttgggtagaactagtgttgtgtaaattg-aaaaaattggaaatcccacatcggatg 466  Q
    ||||| |||||||||||||   |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||    
T  6111645 gactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaaaatggaaatcccacatcggatg 6111721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 2759139 - 2759255
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccac 458  Q
    |||||||||||| ||| ||||||| || |||||| || |||||| || | ||||||| || ||||||||| |||| ||||||||||  || || ||||||    
T  2759139 tgttggaacatgcgtgaaaattgagtt-aaaagattaaacacaattttctatgttggataaaactagtgtagtgtgaattgaaaaatgtgaaagtcccac 2759237  T
Q  459 atcggatggaacacacac 476  Q
    |||| |||||||| ||||    
T  2759238 atcgaatggaacatacac 2759255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 24588522 - 24588571
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattccca 409  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  24588522 tgttggaacatgtgtggaaattga-gtaaaaagactaaacacaaattccca 24588571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 29157094 - 29157174
Alignment:
Q  387 aaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatgga 468  Q
    ||||||||  |||||||||||||| ||||||||||  ||| |||||| ||||||||||| ||||| ||| |||| |||||||    
T  29157094 aaaagactgaacacaaattcccatattgggtagaataagt-ttgtgtgaattgaaaaaaatggaagtcctacattggatgga 29157174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 451
Target Start/End: Complemental strand, 15509493 - 15509402
Alignment:
Q  359 tgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaa 451  Q
    ||||||||||| |||| ||||| | |||||| ||||| ||||||||| |  ||||| ||||||||||| || ||| ||||||||||| |||||    
T  15509493 tgttggaacatatgtgaaaattaagttaaaa-gactaaacacaaatttctctgttgagtagaactagtattatgtgaattgaaaaaagtggaa 15509402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 46909 - 46967
Alignment:
Q  413 tgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaaca 471  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||    
T  46909 tgggtagaactagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggaaca 46967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 51795 - 51910
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| |||| ||||||| |  ||  ||||| |||||||||||||   ||||||||| |||||| |||| ||||||||||| ||||| || ||    
T  51795 ttgttggaacatatgtgaaaattgagt--aattgactaaacacaaattcccacaatgggtagaattagtgtagtgtgaattgaaaaaagtggaagtcaca 51892  T
Q  458 catcggatggaacacaca 475  Q
    | ||||||||| ||||||    
T  51893 cgtcggatggatcacaca 51910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 257838 - 257762
Alignment:
Q  368 atgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaa 445  Q
    ||||||||||||||| |||||| ||||| ||||||||||  |||||| ||||||||| |||||||| |||||||||||    
T  257838 atgtgtggaaattgagttaaaa-gactaaacacaaattcttatgttgagtagaactaatgttgtgtgaattgaaaaaa 257762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 8094 - 8011
Alignment:
Q  391 gactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    ||||| ||||||||||||||  |||||||||||||||| |||  ||||| ||||| ||||| |||||||||||||||| ||||||    
T  8094 gactaaacacaaattcccataatgggtagaactagtgtagtgagaattg-aaaaagtggaagtcccacatcggatggatcacaca 8011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 48894 - 48956
Alignment:
Q  413 tgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||| ||||||||||| |||| ||||||||||| ||||| |||||||||||||||| ||||||    
T  48894 tgggaagaactagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggatcacaca 48956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 149740 - 149678
Alignment:
Q  413 tgggtagaactagtgttgtgtaaattgaaaaaattggaaatcccacatcggatggaacacaca 475  Q
    |||| ||||||||||| |||| ||||||||||| ||||| |||||||||||||||| ||||||    
T  149740 tgggaagaactagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggatcacaca 149678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 213253 - 213368
Alignment:
Q  358 ttgttggaacatgtgtggaaattgacttaaaaagactagacacaaattcccatgttgggtagaactagtgttgtgtaaattgaaaaaattggaaatccca 457  Q
    |||||||||||| ||| |||||||| |  ||  ||||| |||||||||||||   ||||||||| || ||| |||| ||||||||||| ||||| || ||    
T  213253 ttgttggaacatatgttgaaattgagt--aattgactaaacacaaattcccacaatgggtagaattaatgtagtgtgaattgaaaaaagtggaagtctca 213350  T
Q  458 catcggatggaacacaca 475  Q
    ||||  ||||| ||||||    
T  213351 catcaaatggatcacaca 213368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University