View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_8 (Length: 452)
Name: NF3781_low_8
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 27 - 438
Target Start/End: Complemental strand, 6223908 - 6223496
Alignment:
| Q |
27 |
ttagaattttcaatgaataattttccttgaacaccaataaccttcatcagactttgcagtactcttctacagtccacctttaaaatcccaatttcgctca |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
6223908 |
ttagaattttcaatgaataattttccttgaacaccaataaccttcatcagactttgcagtactcttccatagtccacctttaaaatcccaatttcgctca |
6223809 |
T |
|
| Q |
127 |
taattatcaacagcctccgattcatgatagaatctccaagcattacccttaccatttaaccactttgcatagttatggagatgccaaagcacaatcctgt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6223808 |
taattatcaacagcctccgattcatgatagaatctccaagcattacccttaccatttaaccactttgcatagttatgcagatgccaaagcacaatcctgt |
6223709 |
T |
|
| Q |
227 |
ttgctcaataaatgataaatccaccgatgaatataatcggtattttttcgcattcacgagttcgggacatcagttaccgctaagtcatgatcaaaagatc |
326 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6223708 |
ttgctcaataaatgataaatccaccgatgaatatagtcggtattttttcgcattcacgagttcgggacatcagttaccgctaagttatgatcaaaagatc |
6223609 |
T |
|
| Q |
327 |
ggaattcaagctcggttttttaatattaaaact-nnnnnnntgtatgtttttagaccatctaatgttgatcgaatggtgactaatgtaccaaatgcagga |
425 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6223608 |
ggaattcaagctcggttttttaatattaaaactaaaaaaaatgtatgtttttagaccatctaatgttgatcgaatggtgactaatgttccaaatgcagga |
6223509 |
T |
|
| Q |
426 |
ttccgtgtgatga |
438 |
Q |
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||||||||||||| |
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| T |
6223508 |
ttccgtgtgatga |
6223496 |
T |
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