View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_high_10 (Length: 242)
Name: NF3782_high_10
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31938332 - 31938097
Alignment:
| Q |
1 |
tttaagtgtgcagaaattcatcttgcaattgataaaattttgtggttgtgttgattagtgtg--ttctttggatcaataacatgattttcgcttggtctt |
98 |
Q |
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| T |
31938332 |
tttaagtgtgcagaaattcatcttgcaattgataaaattttgtggttgtgttgattagtgtgaattctttggatcaataacatgattttcgcttggtctt |
31938233 |
T |
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| Q |
99 |
tgg--------gtaccagattagtctgttagtaggaatggtttctaattcgaactggttcctatgcttttatgactgtctctttcgctaagttcttgcat |
190 |
Q |
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| T |
31938232 |
tggtgagaaaggtaccagattagtctgttagtaggaatggtttctaattcgaactggttcctatgcttttatgactgtctcttttgctaagttcttgcat |
31938133 |
T |
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| Q |
191 |
tgtatcgggtttccactttgtatgtgttggtgttgc |
226 |
Q |
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| T |
31938132 |
tgtatcgggtttccactttgtatgtgttggtgttgc |
31938097 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 5638476 - 5638397
Alignment:
| Q |
20 |
atcttgcaattgataaaattttgtggttgtgttgattagtgtg--ttctttggatcaataacatgattttcgcttggtct |
97 |
Q |
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| T |
5638476 |
atcttgcaattgatataattttgtggctgtcttgtttagtgtgaattctttggattattagcattattttcgcttggtct |
5638397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 445773 - 445814
Alignment:
| Q |
123 |
aggaatggtttctaattcgaactggttcctatgcttttatga |
164 |
Q |
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| T |
445773 |
aggaatggtttctaattcaaactggttcctatgctttcatga |
445814 |
T |
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