View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_high_11 (Length: 236)
Name: NF3782_high_11
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 36875602 - 36875784
Alignment:
| Q |
35 |
catacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaagcttcgacgttggtccaagatagcttagcttgtgggcagaa |
134 |
Q |
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| T |
36875602 |
catacagtgcttgatcatcgattcttgagtgtgacaagttcaccacctccagattggaaggttcaacgttggtcgaaaatagcttagctcgtggacagaa |
36875701 |
T |
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| Q |
135 |
gggaaattttaaatgcctaatattacaacatgtctttaacacattaacaatacatatgtcgtcacaagagctcaaatcaagaag |
218 |
Q |
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| T |
36875702 |
ggcgaattt-aaatgcctaatattacaacaaatctttgacactttaccaatacatatgtcatcgcaagagctcaaatcaagaag |
36875784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 33714950 - 33714789
Alignment:
| Q |
15 |
agggcaaatctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaagcttcgacgttggtccaagat |
114 |
Q |
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| T |
33714950 |
agggcaactctttgaaatcgcatacaatgcgccatcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagttgatcaaaaat |
33714851 |
T |
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| Q |
115 |
agcttagcttgtgggcagaagggaaattttaaatgcctaatattacaacatgtctttaacac |
176 |
Q |
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| T |
33714850 |
agcttaggttgtgggtagaaggcaaagttcaaatgcctaaacttacagcatctatttaacac |
33714789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 37580915 - 37580754
Alignment:
| Q |
15 |
agggcaaatctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaagcttcgacgttggtccaagat |
114 |
Q |
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| T |
37580915 |
agggcaaatcattgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttggaagcttcatagttgatcaaacat |
37580816 |
T |
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| Q |
115 |
agcttagcttgtgggcagaagggaaattttaaatgcctaatattacaacatgtctttaacac |
176 |
Q |
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| T |
37580815 |
agattagcttgtcggcaccggacaaatttaaaatgcctaatcttacgacatttctttaacac |
37580754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 36811122 - 36811039
Alignment:
| Q |
15 |
agggcaaatctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaagcttc |
98 |
Q |
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| T |
36811122 |
agggcaaatctttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtttggaagcttc |
36811039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 33709069 - 33708991
Alignment:
| Q |
15 |
agggcaaatctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaa |
93 |
Q |
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| T |
33709069 |
agggcaactctttgagattgcatacaatgcaccatcatcaattcttgagtctgacaagttcagcacctccagtttggaa |
33708991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 37587649 - 37587571
Alignment:
| Q |
15 |
agggcaaatctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaa |
93 |
Q |
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| T |
37587649 |
agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa |
37587571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 33396685 - 33396724
Alignment:
| Q |
182 |
caatacatatgtcgtcacaagagctcaaatcaagaagctg |
221 |
Q |
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| T |
33396685 |
caatacatatgtcgtcacaagagctcaaatcaagaagctg |
33396724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 18724451 - 18724275
Alignment:
| Q |
15 |
agggcaaatctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagt----ccaacacctccaatttggaagcttcgacgttggtcca |
110 |
Q |
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| T |
18724451 |
agggaaaatctttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaaccaacacctctagtttggaagcttcaaagttgatcca |
18724352 |
T |
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| Q |
111 |
agatagcttagcttgtgggcagaagggaaattttaaatgcctaatattacaacatgtctttaacacattaacaatac |
187 |
Q |
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| | ||||||||||||||||||||| ||| || |||||||| ||||||||||| |||||||||| ||| |||||| |
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| T |
18724351 |
aaaatgcttagcttgtgggcagaaggcaaagttcaaatgcctggtattacaacatttctttaacactttaccaatac |
18724275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 52082593 - 52082663
Alignment:
| Q |
23 |
tctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaa |
93 |
Q |
| |
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| T |
52082593 |
tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa |
52082663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 52092789 - 52092859
Alignment:
| Q |
23 |
tctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttggaa |
93 |
Q |
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| T |
52092789 |
tctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaa |
52092859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 17636488 - 17636420
Alignment:
| Q |
23 |
tctttgagattgcatacaatgcttcaccatcaattcttgaatttgacaagtccaacacctccaatttgg |
91 |
Q |
| |
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|||||||||| |||||||||||||| | |||| || || | |||||||| ||||||||||||||||| |
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| T |
17636488 |
tctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgg |
17636420 |
T |
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