View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_high_12 (Length: 232)
Name: NF3782_high_12
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 12062128 - 12062325
Alignment:
| Q |
17 |
gagaatggaataattgagttcataaatgctatgagggaagctaatcctgatctgctgtcagttactgacaacaatggtagaggcatattttggtatgcaa |
116 |
Q |
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| T |
12062128 |
gagaatggaatagttgagttcgtaaatgctatgagggaagctaatcctgatctgctgtcagttactgacaacaatggtagaggcatattttggtatgcaa |
12062227 |
T |
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| Q |
117 |
ttcagaatcgcagactaaaagtgttccaactcatatactttctaaaaggattggagaaggagatgtttcgatatcgcacagacgtgttgggcaataac |
214 |
Q |
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| T |
12062228 |
ttcagaatcgcagactaaaagtgttccaactcatatactttctaaaaggattggagaaggagatgtttcgatatcgcacagacgtgttgggcaataac |
12062325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 12113132 - 12112951
Alignment:
| Q |
18 |
agaatggaataattgagttcataaatgctatgagggaagctaatcctgatctgctgtcagttactgacaacaatggtagaggcatattttggtatgcaat |
117 |
Q |
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| T |
12113132 |
agaatggaataattacattgataaatgctatgaggaatgctaatccttatctacttgcagtcactgataacagtggtagaggcatactttggtatgcaat |
12113033 |
T |
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| Q |
118 |
tcagaatcgcagactaaaagtgttccaactcatatactttctaaaaggattggagaaggagatgtttcgatatcgcacagac |
199 |
Q |
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| T |
12113032 |
tctgaatcgcagaagatatgttttccaactcatatattctctcaatggattggagaaggagatgattaaatatcgcacagac |
12112951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 12092346 - 12092165
Alignment:
| Q |
18 |
agaatggaataattgagttcataaatgctatgagggaagctaatcctgatctgctgtcagttactgacaacaatggtagaggcatattttggtatgcaat |
117 |
Q |
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| T |
12092346 |
agaatggaataattacattgataaatgctatgaggaatgctaatccttatctacttgcagtcactgataacagtggtagaggcatactttggtatgcaat |
12092247 |
T |
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| Q |
118 |
tcagaatcgcagactaaaagtgttccaactcatatactttctaaaaggattggagaaggagatgtttcgatatcgcacagac |
199 |
Q |
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| T |
12092246 |
tctgaatcgcagaagatctgttttccaactcatatattctctcaatggattggagaaggagatgattaaatatcgcacagac |
12092165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 12086737 - 12086556
Alignment:
| Q |
18 |
agaatggaataattgagttcataaatgctatgagggaagctaatcctgatctgctgtcagttactgacaacaatggtagaggcatattttggtatgcaat |
117 |
Q |
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| T |
12086737 |
agaatggaataattacattgataaatgctatgaggaatgtcaatccttatctactttcagtcaacgataacagtggtagaagcatactttggtatgcaat |
12086638 |
T |
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| Q |
118 |
tcagaatcgcagactaaaagtgttccaactcatatactttctaaaaggattggagaaggagatgtttcgatatcgcacagac |
199 |
Q |
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| T |
12086637 |
actgaatcgcagaagatatgttttccaactcataaattctctcaaaggatgggagaaggagatgattagatatcgcacagac |
12086556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 11999151 - 11999205
Alignment:
| Q |
18 |
agaatggaataattgagttcataaatgctatgagggaagctaatcctgatctgct |
72 |
Q |
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| T |
11999151 |
agaatggaataattgagttcataaatgcaatgagggatgctaattctgatttgct |
11999205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 12009662 - 12009619
Alignment:
| Q |
21 |
atggaataattgagttcataaatgctatgagggaagctaatcct |
64 |
Q |
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| T |
12009662 |
atggaataatcgagttcataaatgccatgagggacgctaatcct |
12009619 |
T |
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