View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3782_high_8 (Length: 284)
Name: NF3782_high_8
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 33 - 265
Target Start/End: Complemental strand, 37876454 - 37876216
Alignment:
| Q |
33 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataataata---taaaatcaggcattcataaaacatcacttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
37876454 |
atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt |
37876355 |
T |
|
| Q |
130 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37876354 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagac-ccccacatggagaaggtataatgccggtttgcaaaggaacac |
37876256 |
T |
|
| Q |
230 |
acaagac--tggaatgaaac---ctacaattgagttcatct |
265 |
Q |
| |
|
|| |||| | ||||||||| |||||||||||||||||| |
|
|
| T |
37876255 |
ac-agaccatagaatgaaacctactacaattgagttcatct |
37876216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 33 - 265
Target Start/End: Original strand, 23895227 - 23895465
Alignment:
| Q |
33 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataa---taataatataaaatcaggcattcataaaacatcacttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
|
|
| T |
23895227 |
atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt |
23895326 |
T |
|
| Q |
130 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23895327 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaaga-cccccacatggagaaggtataatgccggtttgcaaaggaacac |
23895425 |
T |
|
| Q |
230 |
acaagac--tggaatgaaac---ctacaattgagttcatct |
265 |
Q |
| |
|
|| |||| | ||||||||| |||||||||||||||||| |
|
|
| T |
23895426 |
ac-agaccatagaatgaaacctactacaattgagttcatct |
23895465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 96 - 265
Target Start/End: Complemental strand, 18107053 - 18106887
Alignment:
| Q |
96 |
aatataaaatcaggcattcataaaacatcacttttatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacat |
195 |
Q |
| |
|
||||||||||||| ||| |||||| | || ||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| | ||||||| |
|
|
| T |
18107053 |
aatataaaatcagacat-cataaagcttcccttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaaga-ctcccacat |
18106956 |
T |
|
| Q |
196 |
ggagaaggtataatgccggtttgcaaaggaacacacaagactggaatgaaacctacaattgagttcatct |
265 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| |||| | ||||||||||| |||||||||||||| |
|
|
| T |
18106955 |
agaaaaggtataatgccggtgtgcaaaggaacacac-agaccgaaatgaaacctataattgagttcatct |
18106887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 18138725 - 18138786
Alignment:
| Q |
33 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa |
94 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
18138725 |
atcaaaactacaatttagcattggagtcttttagagattccatgtctcaaaatctataataa |
18138786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 18097626 - 18097565
Alignment:
| Q |
33 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa |
94 |
Q |
| |
|
||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
18097626 |
atcaaaactataatttagcgttgaagtctattagacattccatgtctcaaaatctataataa |
18097565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University