View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3782_high_9 (Length: 271)
Name: NF3782_high_9
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 35 - 266
Target Start/End: Original strand, 3046186 - 3046407
Alignment:
| Q |
35 |
tccaaccccattacatagaagacattacatcaatcatacctagtggaaagacacacgtctttctccgcttccataaattaactacaatcattgagcttcc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3046186 |
tccaaccccattacatagaagacattacatcaatcataactagtggaaagacgcacgtctttcttcgcttccataaattaactacaatcattgagcttcc |
3046285 |
T |
|
| Q |
135 |
aaatatggaagacttccttcatccaaccaaatcgagattcattcttcccatcatatattccaagaacatctaactaacggaatgatatcctttctcaaaa |
234 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
3046286 |
aaatatggaagtcttccttcatccaaccaaatcgagattcattcttcccatcatatattcc----------aactaacggaatcatatcctttctcaaaa |
3046375 |
T |
|
| Q |
235 |
tccaccttcactaacaaacaccctttgctact |
266 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
3046376 |
tccaccttcactaacaaacacccttttctact |
3046407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University