View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3782_low_1 (Length: 477)

Name: NF3782_low_1
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3782_low_1
NF3782_low_1
[»] chr3 (12 HSPs)
chr3 (19-468)||(39584602-39585049)
chr3 (335-468)||(39569063-39569199)
chr3 (249-468)||(39571880-39572099)
chr3 (34-173)||(39561964-39562102)
chr3 (34-173)||(39566643-39566781)
chr3 (19-199)||(39580971-39581161)
chr3 (394-465)||(39566405-39566476)
chr3 (92-193)||(39560633-39560735)
chr3 (397-465)||(39581339-39581407)
chr3 (406-468)||(39561693-39561755)
chr3 (92-175)||(39572145-39572228)
chr3 (247-315)||(39561839-39561906)


Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 39584602 - 39585049
Alignment:
Q  19 gtatattgctacttgcaagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  39584602 gtatattgctacttgcaagagccaaattagaaaatctagcctttcgagatttacaaggttttctttagtaaaa-tataatcttgaacacaatctaatgcg 39584700  T
Q  119 catgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatacttggcaattttatacaatactatatcatactacatatttaaatt 218  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  39584701 catgatttaagattaagttggtgtccatatattcacaaaaggcacaactgagatacatggcaattttatacaatactatatcatactacatatt-aaatt 39584799  T
Q  219 agtgttcaaagataatagagtgcatctcggaaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39584800 agtgttcaaagataatagagtgcatctcggaaagcatttccaatttacttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaa 39584899  T
Q  319 ctacttcaatatattcttagctttaatttcctctctttttctaactgcaacacataactagacacatattcctaactatactctcaaattttcaatggat 418  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39584900 ccacttcaatatattcttagctttaatttcctctccttttctaactgcaacacataactagacacatattcctaactatactctcaaattttcaatggat 39584999  T
Q  419 ccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39585000 ccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat 39585049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 468
Target Start/End: Complemental strand, 39569199 - 39569063
Alignment:
Q  335 ttagctttaatttcctctct--ttttctaactgcaacacataactagacacatattcctaa---ctatactctcaaattttcaatggatccatcccatat 429  Q
    |||||||| |||||||||||  ||||||| || |||||||||| |||||| ||  ||||||   ||| |||||||| |||||||||||||||| ||||||    
T  39569199 ttagctttcatttcctctctctttttctagctacaacacataattagacaaat--tcctaattgctaaactctcaatttttcaatggatccattccatat 39569102  T
Q  430 accagcttatgcaaacttcagctgtgaactgagaataat 468  Q
    ||| |||||||||||||||||||||||||| ||||||||    
T  39569101 acctgcttatgcaaacttcagctgtgaactaagaataat 39569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 468
Target Start/End: Complemental strand, 39572099 - 39571880
Alignment:
Q  249 aaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaactacttcaatatattcttagctttaatttc 348  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||   |||||| |||||||||||| |||  |||    ||||||||| ||| ||||||    
T  39572099 aaagcatttccaatttactttt-tcaacactatataatacatcacctacaacaattcaaactcaaaccaac--ctttttcatattcttaccttcaatttc 39572003  T
Q  349 ctctcttttt-ctaactgcaacacataactagacacatattcctaacta----tactctcaaattttcaatggatccatcccatataccagcttatgcaa 443  Q
    |||||||||| ||| ||  |||||||||||||||| ||  |||||||||    |||||||||    |||||||||||||| |||||| | ||||||| ||    
T  39572002 ctctcttttttctagctaaaacacataactagacaaat--tcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaa 39571905  T
Q  444 acttcagctgtgaactgagaataat 468  Q
    | |||||||| ||||||||||||||    
T  39571904 atttcagctgcgaactgagaataat 39571880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 39562102 - 39561964
Alignment:
Q  34 caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagatta 133  Q
    ||||||||||||| ||||||| ||||||||||||||   ||||||||||||  ||| | ||||||||| |||||||||| | | ||||| ||||||||||    
T  39562102 caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataaga-tataatcttcaacacaatctcacgtgcatggtttaagatta 39562004  T
Q  134 agttggtgtccatgtattcacaaaaagcacaactgagata 173  Q
    || |||| |  || ||||||||||| ||||||||||||||    
T  39562003 agatggtattaatatattcacaaaaggcacaactgagata 39561964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 39566781 - 39566643
Alignment:
Q  34 caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagatta 133  Q
    ||||||||||||| ||||||||||||||||||||||   ||||||||||||  | || ||||||||||  ||||||||| ||| ||||  ||||||||||    
T  39566781 caagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaat-aagatataatcttctacacaatctcatgtgcatagtttaagatta 39566683  T
Q  134 agttggtgtccatgtattcacaaaaagcacaactgagata 173  Q
    || |||| |  || |||||||||| ||||||||| |||||    
T  39566682 agatggtattaatatattcacaaagagcacaacttagata 39566643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 39580971 - 39581161
Alignment:
Q  19 gtatattgctacttgcaagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaa-aaatataatcttgaacacaatct----- 112  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||   ||  ||||||||  |||   |||| ||||| ||||||||||         
T  39580971 gtatattgctacttgcaagagcaaaattgtaaaatctagcctttcgagattctaaactttttctttaataaggtatatgatcttcaacacaatctcatgt 39581070  T
Q  113 --aatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatacttg-gcaa-ttttatacaatactatat 199  Q
      |||| |||||||| || ||||||||||| |  || ||| |||||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  39581071 gcaatgtgcatgattcaatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttttatacaatactatat 39581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 39566476 - 39566405
Alignment:
Q  394 ctatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaat 465  Q
    |||||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||| | ||||||||||||    
T  39566476 ctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaat 39566405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 39560735 - 39560633
Alignment:
Q  92 atataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatacttg-gcaattttataca 190  Q
    |||||||||| |||| ||||| ||| |||||||| |||| ||||||||| |  || ||||||||||| |||||||||||||||| |  ||||||||||||    
T  39560735 atataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactggatcaattttataca 39560636  T
Q  191 ata 193  Q
    |||    
T  39560635 ata 39560633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 39581339 - 39581407
Alignment:
Q  397 tactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaat 465  Q
    ||||||||| |||||||||||||||| ||| ||| | ||||||||||||||||| | ||||||||||||    
T  39581339 tactctcaatttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaat 39581407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 468
Target Start/End: Complemental strand, 39561755 - 39561693
Alignment:
Q  406 attttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat 468  Q
    ||||||||||||||||||  | | ||| || |||||||||||||| |||||||||||||||||    
T  39561755 attttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataat 39561693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 39572228 - 39572145
Alignment:
Q  92 atataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatact 175  Q
    ||||||| || |||||||||| ||| ||||||| |||||||||||||||    || ||||| ||||| | ||||||||||||||    
T  39572228 atataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatact 39572145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 39561906 - 39561839
Alignment:
Q  247 ggaaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaac 315  Q
    ||||||||||||||||| || ||| || || ||||||||| ||||||   |||||||||||||||||||    
T  39561906 ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac 39561839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University