View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_low_12 (Length: 267)
Name: NF3782_low_12
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 36857171 - 36857342
Alignment:
| Q |
78 |
tatctacccaaacactct--aggatttcaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttga |
175 |
Q |
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| T |
36857171 |
tatctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttga |
36857270 |
T |
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| Q |
176 |
cttcctccaccatttcatcaacctctacttgaccttattgttaattaaagatccagtcatttctcgacttccaaat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36857271 |
cttcctccaccatttcatcaacctctacttgaccttattg----ttaaagatccagtcatttctcgacttccaaat |
36857342 |
T |
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