View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_low_13 (Length: 246)
Name: NF3782_low_13
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42063203 - 42063439
Alignment:
| Q |
1 |
ctgcatccgctttaccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttgg |
100 |
Q |
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| T |
42063203 |
ctgcatccgctttgccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttgg |
42063302 |
T |
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| Q |
101 |
cgagtcgttaattgaggtgacccattttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaac |
200 |
Q |
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| T |
42063303 |
cgagtcgttaattgaggtaacccattttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaac |
42063402 |
T |
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| Q |
201 |
atgagatcaaattttggaaatccactggctgatgatg |
237 |
Q |
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| T |
42063403 |
atgagatcaaattttggaaatccactggctgatgatg |
42063439 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
53 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
152 |
Q |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
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| Q |
153 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
234 |
Q |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
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