View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3782_low_2 (Length: 447)

Name: NF3782_low_2
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3782_low_2
NF3782_low_2
[»] chr6 (24 HSPs)
chr6 (18-432)||(11085712-11086124)
chr6 (18-205)||(2736166-2736354)
chr6 (76-205)||(4868576-4868705)
chr6 (76-205)||(9705210-9705339)
chr6 (87-206)||(4868811-4868930)
chr6 (87-206)||(9704987-9705106)
chr6 (89-203)||(30256782-30256895)
chr6 (89-205)||(25065093-25065209)
chr6 (118-205)||(13740914-13741001)
chr6 (118-205)||(13746414-13746501)
chr6 (87-206)||(33494506-33494625)
chr6 (41-202)||(5572386-5572546)
chr6 (118-203)||(8026387-8026472)
chr6 (76-205)||(17147659-17147788)
chr6 (118-203)||(27772712-27772797)
chr6 (87-191)||(6400633-6400737)
chr6 (123-203)||(8566960-8567039)
chr6 (87-203)||(24554084-24554200)
chr6 (130-205)||(6054413-6054488)
chr6 (123-206)||(11721908-11721991)
chr6 (87-206)||(13353168-13353287)
chr6 (87-206)||(33796293-33796412)
chr6 (84-206)||(11085545-11085667)
chr6 (118-203)||(27653215-27653300)
[»] chr1 (17 HSPs)
chr1 (76-205)||(27413538-27413667)
chr1 (87-206)||(4113004-4113123)
chr1 (76-207)||(25145482-25145613)
chr1 (107-205)||(40079139-40079237)
chr1 (87-205)||(41035826-41035944)
chr1 (87-206)||(25145718-25145837)
chr1 (76-207)||(35772220-35772351)
chr1 (82-205)||(26177105-26177228)
chr1 (99-206)||(39348351-39348457)
chr1 (94-205)||(52650770-52650881)
chr1 (94-203)||(17452680-17452789)
chr1 (123-206)||(30369838-30369921)
chr1 (100-183)||(12488987-12489070)
chr1 (128-191)||(31181526-31181589)
chr1 (76-206)||(35892247-35892377)
chr1 (82-139)||(17412529-17412586)
chr1 (123-203)||(3169769-3169849)
[»] chr4 (33 HSPs)
chr4 (86-206)||(35788625-35788745)
chr4 (76-205)||(6218395-6218524)
chr4 (86-207)||(52559533-52559654)
chr4 (82-203)||(28245527-28245648)
chr4 (76-205)||(52559760-52559889)
chr4 (94-206)||(6218178-6218290)
chr4 (87-207)||(18528214-18528334)
chr4 (87-206)||(50543565-50543684)
chr4 (87-205)||(22845446-22845564)
chr4 (87-205)||(39902562-39902680)
chr4 (123-203)||(9685635-9685715)
chr4 (114-206)||(22231306-22231398)
chr4 (76-203)||(21498751-21498878)
chr4 (76-191)||(21750055-21750170)
chr4 (87-206)||(36685873-36685991)
chr4 (87-205)||(22863441-22863559)
chr4 (128-206)||(35609709-35609787)
chr4 (87-205)||(35788861-35788979)
chr4 (128-206)||(40717439-40717517)
chr4 (87-184)||(11783812-11783909)
chr4 (118-211)||(20821971-20822064)
chr4 (128-205)||(35609489-35609566)
chr4 (109-206)||(35796975-35797072)
chr4 (118-203)||(53814930-53815015)
chr4 (115-206)||(1518159-1518250)
chr4 (123-206)||(18528455-18528538)
chr4 (94-205)||(22827512-22827623)
chr4 (87-205)||(21684965-21685083)
chr4 (87-161)||(27634124-27634198)
chr4 (128-185)||(6666219-6666276)
chr4 (118-203)||(21498352-21498437)
chr4 (123-203)||(9685401-9685481)
chr4 (114-186)||(53699021-53699093)
[»] chr7 (31 HSPs)
chr7 (123-207)||(36993071-36993155)
chr7 (142-206)||(4506954-4507018)
chr7 (114-206)||(25620130-25620222)
chr7 (76-203)||(29469796-29469923)
chr7 (87-206)||(36277224-36277343)
chr7 (118-207)||(21054950-21055039)
chr7 (86-203)||(48661556-48661673)
chr7 (123-207)||(3038081-3038165)
chr7 (130-206)||(33996309-33996385)
chr7 (123-206)||(26239914-26239997)
chr7 (87-205)||(6634822-6634940)
chr7 (118-191)||(2544460-2544533)
chr7 (30-67)||(10221740-10221777)
chr7 (128-205)||(15317560-15317637)
chr7 (118-203)||(34027391-34027476)
chr7 (41-205)||(34027547-34027712)
chr7 (87-207)||(47710410-47710530)
chr7 (87-207)||(47722066-47722186)
chr7 (118-206)||(48243435-48243523)
chr7 (123-206)||(23796182-23796265)
chr7 (87-206)||(28080632-28080750)
chr7 (123-206)||(36276989-36277072)
chr7 (87-157)||(6001482-6001552)
chr7 (85-191)||(14540965-14541070)
chr7 (96-206)||(21821782-21821892)
chr7 (87-204)||(46452599-46452716)
chr7 (123-205)||(48243060-48243142)
chr7 (128-205)||(43085536-43085613)
chr7 (123-191)||(10903088-10903156)
chr7 (128-184)||(21213061-21213117)
chr7 (123-203)||(31257032-31257112)
[»] chr8 (26 HSPs)
chr8 (87-206)||(24532419-24532538)
chr8 (87-209)||(18004091-18004213)
chr8 (52-203)||(19256587-19256739)
chr8 (87-206)||(39052927-39053046)
chr8 (118-203)||(19256821-19256906)
chr8 (130-206)||(8084137-8084213)
chr8 (87-203)||(28069358-28069474)
chr8 (76-191)||(5931962-5932077)
chr8 (76-206)||(11232192-11232322)
chr8 (107-205)||(29005851-29005949)
chr8 (18-206)||(37001360-37001550)
chr8 (128-208)||(24075302-24075382)
chr8 (109-205)||(35682780-35682876)
chr8 (76-203)||(17477021-17477148)
chr8 (123-186)||(34843120-34843183)
chr8 (87-205)||(39960158-39960277)
chr8 (87-206)||(41790626-41790744)
chr8 (87-205)||(42846604-42846723)
chr8 (87-205)||(10449967-10450085)
chr8 (87-205)||(25325613-25325731)
chr8 (128-206)||(37001234-37001312)
chr8 (118-203)||(17469816-17469901)
chr8 (123-191)||(4828296-4828364)
chr8 (114-206)||(12688301-12688393)
chr8 (87-191)||(16049996-16050100)
chr8 (87-183)||(36917460-36917556)
[»] chr5 (27 HSPs)
chr5 (41-203)||(27132994-27133157)
chr5 (76-205)||(41666756-41666885)
chr5 (86-206)||(41666991-41667111)
chr5 (87-203)||(42295546-42295662)
chr5 (76-206)||(8081111-8081242)
chr5 (123-206)||(24528543-24528626)
chr5 (76-206)||(24346499-24346629)
chr5 (76-205)||(20510641-20510770)
chr5 (123-215)||(13296895-13296987)
chr5 (41-191)||(6637757-6637908)
chr5 (123-206)||(25258299-25258382)
chr5 (123-206)||(25322089-25322172)
chr5 (76-206)||(24269869-24269998)
chr5 (109-206)||(24531588-24531685)
chr5 (123-206)||(2063732-2063814)
chr5 (123-206)||(15480325-15480408)
chr5 (118-205)||(19705901-19705988)
chr5 (119-206)||(21306886-21306973)
chr5 (119-206)||(21314724-21314811)
chr5 (87-206)||(24346735-24346854)
chr5 (135-206)||(25258092-25258163)
chr5 (135-206)||(25321882-25321953)
chr5 (76-203)||(26137110-26137237)
chr5 (85-203)||(7607559-7607677)
chr5 (123-204)||(9368598-9368679)
chr5 (89-206)||(36040474-36040591)
chr5 (123-207)||(38976936-38977020)
[»] chr3 (23 HSPs)
chr3 (87-206)||(54368483-54368602)
chr3 (87-206)||(16239558-16239677)
chr3 (118-203)||(20327850-20327935)
chr3 (76-205)||(35038193-35038322)
chr3 (118-206)||(1723074-1723162)
chr3 (87-203)||(11589752-11589868)
chr3 (118-205)||(34610558-34610646)
chr3 (107-206)||(54567879-54567978)
chr3 (76-205)||(4155515-4155644)
chr3 (85-206)||(12930126-12930247)
chr3 (107-184)||(16239814-16239891)
chr3 (149-206)||(37246851-37246908)
chr3 (128-204)||(45828254-45828330)
chr3 (76-191)||(20327627-20327742)
chr3 (135-206)||(45138969-45139040)
chr3 (128-206)||(4155332-4155410)
chr3 (128-206)||(8018976-8019054)
chr3 (164-206)||(27086634-27086676)
chr3 (130-191)||(1800225-1800286)
chr3 (143-208)||(24866220-24866285)
chr3 (128-189)||(50930710-50930771)
chr3 (118-206)||(17638233-17638320)
chr3 (94-206)||(22729074-22729186)
[»] chr2 (26 HSPs)
chr2 (76-205)||(5711438-5711567)
chr2 (76-205)||(16419458-16419587)
chr2 (87-206)||(2029736-2029855)
chr2 (123-206)||(28407791-28407874)
chr2 (87-159)||(4662198-4662270)
chr2 (87-203)||(17854930-17855046)
chr2 (87-206)||(14466408-14466527)
chr2 (87-206)||(40379442-40379561)
chr2 (76-206)||(2029960-2030090)
chr2 (87-205)||(40379208-40379326)
chr2 (123-203)||(5509082-5509162)
chr2 (76-204)||(17525099-17525227)
chr2 (129-205)||(17719575-17719651)
chr2 (118-206)||(27897604-27897691)
chr2 (87-203)||(33606056-33606171)
chr2 (87-191)||(40718220-40718324)
chr2 (80-203)||(40149004-40149127)
chr2 (17-67)||(10523148-10523198)
chr2 (128-206)||(15124781-15124859)
chr2 (85-191)||(32884072-32884178)
chr2 (128-205)||(19570973-19571050)
chr2 (87-160)||(37812542-37812615)
chr2 (123-191)||(2324243-2324311)
chr2 (76-184)||(2324430-2324538)
chr2 (118-190)||(14927291-14927363)
chr2 (76-160)||(37812312-37812396)
[»] scaffold0542 (1 HSPs)
scaffold0542 (84-160)||(5860-5936)
[»] scaffold0005 (1 HSPs)
scaffold0005 (138-205)||(288656-288723)
[»] scaffold0334 (1 HSPs)
scaffold0334 (118-202)||(4431-4515)
[»] scaffold0048 (1 HSPs)
scaffold0048 (118-206)||(81840-81928)
[»] scaffold0092 (1 HSPs)
scaffold0092 (87-206)||(5622-5741)
[»] scaffold0050 (1 HSPs)
scaffold0050 (118-180)||(69557-69619)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 11085712 - 11086124
Alignment:
Q  18 gtttccgccatcgaaccatccaccatttatgtccacacttcagatgtccagccctggggtgagagggtatgttaaaagtctcacatcatataggaaatga 117  Q
    |||||||| ||||||| | ||||||||||||| ||| |||||||||||||||||| | | |||||||||||||||||||||||||||  |||||| ||||    
T  11085712 gtttccgctatcgaacaa-ccaccatttatgttcacgcttcagatgtccagccctagcgcgagagggtatgttaaaagtctcacatcggataggagatga 11085810  T
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagatattagatacgg 217  Q
    ||||||||||| |||| ||||||||||||||||||||||||| | || |||| || |||| ||||||||||||||| ||||||||||||  ||| |||||    
T  11085811 cctgccaatatatttataagtgggagcaatgctcacctcacacacagattttgtgaagttatgttagacccaacgacgatttctaagattgtaggtacgg 11085910  T
Q  218 tgataactgataactattaattggttttaaataatagattgtttactcccccagcaaatattagtcataatgccaaaaataaaataaggcaagccatatt 317  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11085911 tgataattgataactattaatt-gttttaaataatagatagtttactcccccagcaaatattagtcataatgccaaaaataaaataagggaagccatatt 11086009  T
Q  318 aagtacaacaagaaaatataactttgttccctnnnnnnnnntatataactttgcatgcgtgtttttacgagacttttcttaccttccgatcagacttcag 417  Q
    ||| ||||||||||||||||||||||||||||         |||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  11086010 aagcacaacaagaaaatataactttgttccctaaaaaaaaatatataactttgcatgtgtgtttttacgagacttttcttaccttccgatcgaacttcag 11086109  T
Q  418 attaccagagttcat 432  Q
    |||| ||||||||||    
T  11086110 attatcagagttcat 11086124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 2736354 - 2736166
Alignment:
Q  18 gtttccgccatcgaaccatccaccatttatgtccacacttcagatgtccagccctggg-gtgagagggtatgttaaaagtctcacatcatataggaaatg 116  Q
    |||||||  |||| |||| ||| ||||||||||||| || ||||||| ||| |||| | ||||| |||| |||| | |||| ||||||   ||||| |||    
T  2736354 gtttccgttatcggaccacccatcatttatgtccacgctccagatgttcagtcctgtgcgtgagggggtgtgttgagagtcccacatcgggtaggagatg 2736255  T
Q  117 acctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    ||||| |||| |||||| |||||||  |||| ||||||||| ||| || |||| | |  |||||||||||||||| | |||||||||||    
T  2736254 acctgacaatgtgtttataagtggggacaatcctcacctcataaacagattttgtaggattgtgttagacccaaccacgatttctaaga 2736166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 4868705 - 4868576
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  4868705 gtgagggggtgtgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 4868606  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||| | |||||||||||    
T  4868605 ttgtgttaggcccaaccacgatttctaaga 4868576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 9705210 - 9705339
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||| ||| | |  |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  9705210 gtgagggggtgtgttaagagtcccacatcggataggacatggcttaacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 9705309  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    |||||||||||||||| | |||||||||||    
T  9705310 ttgtgttagacccaaccacgatttctaaga 9705339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 4868930 - 4868811
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  4868930 tgttaagagtcccacatcggacaggacatggcctggcaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 4868831  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  4868830 ccaaccacgatttctaagat 4868811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 9704987 - 9705106
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||| ||  |||| |||| |||||| ||||||| |||||  ||||||||||| | |||||| ||| |||||||||| |    
T  9704987 tgttaagagtctcacatcggataggacatagcctgacaatgtgtttataagtgggggcaatcatcacctcacaagtcggttttgtggggttgtgttaggc 9705086  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| |  |||||||||||    
T  9705087 ccaaccaccatttctaagat 9705106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 30256782 - 30256895
Alignment:
Q  89 ttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagaccc 188  Q
    |||| |||| ||||||  |||||  |||||||| ||||||||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||    
T  30256782 ttaagagtcccacatcggataggtgatgacctgacaatatgtttataagtggg-gcaatcctcacctcacaagccggttttgtggggttgtgttaggccc 30256880  T
Q  189 aacgatgatttctaa 203  Q
    ||| | |||||||||    
T  30256881 aaccacgatttctaa 30256895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 25065209 - 25065093
Alignment:
Q  89 ttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagaccc 188  Q
    |||| |||| ||||||  |||||| |||  ||| ||||||||||| |||| || ||||| ||||||||||||   |||||| ||| |||||||||| |||    
T  25065209 ttaagagtcccacatcggataggacatggtctgacaatatgtttataagtaggggcaatcctcacctcacaagccggttttgtggggttgtgttaggccc 25065110  T
Q  189 aacgatgatttctaaga 205  Q
    ||| | |||||||||||    
T  25065109 aactacgatttctaaga 25065093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 13740914 - 13741001
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| |||| |||||| ||||||||||||| ||||| |||||| | |||||| ||| |||||||||| |||||| |  ||||||||||    
T  13740914 cctgacaatttgtttataagtgggagcaatcctcacttcacaagtcggttttgtggggttgtgttaggcccaaccacaatttctaaga 13741001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 13746414 - 13746501
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| |||| |||||| ||||||||||||| ||||| |||||| | |||||| ||| |||||||||| |||||| |  ||||||||||    
T  13746414 cctgacaatttgtttataagtgggagcaatcctcacttcacaagtcggttttgtggggttgtgttaggcccaaccacaatttctaaga 13746501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 33494506 - 33494625
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| ||| | ||  |||||||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  33494506 tgttaagagtcccacatcggataggagatggcttgaaaatatgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 33494605  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| |  |||||||||||    
T  33494606 ccaaccaccatttctaagat 33494625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 5572546 - 5572386
Alignment:
Q  41 catttatgtccacacttcagatgtccagccctggggtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgg 140  Q
    ||||||||| ||| |||||||| | ||  ||| | ||||| |||| ||||||||||||||||||   |||||  |  |||| |||| |||||| |||| |    
T  5572546 catttatgttcacgcttcagatctgcaatcctagcgtgag-gggtgtgttaaaagtctcacatcggttaggagtttgcctgacaatttgtttataagttg 5572448  T
Q  141 gagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttcta 202  Q
    | || || |||||||||||| | |||||| ||| |||||||||| |||||| | ||||||||    
T  5572447 gggccatcctcacctcacaagtcggttttgtggggttgtgttaggcccaaccacgatttcta 5572386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 8026387 - 8026472
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | |||||||||    
T  8026387 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 8026472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 17147788 - 17147659
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||| |||||||| |||| | |||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  17147788 gtgagggggtgtgttaagagtcccacatcggataggacatgacctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtgggg 17147689  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    || ||||||  ||||| |  ||||||||||    
T  17147688 ttatgttaggtccaaccaccatttctaaga 17147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 27772712 - 27772797
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||||||||||||||  ||||| | |||||||||    
T  27772712 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggagttgtgttaggtccaaccacgatttctaa 27772797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 6400737 - 6400633
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  | | || ||| |||| |||| |||||| ||||||  ||||| ||||| |||||| | |||||| ||| ||||||||||||    
T  6400737 tgttaagagtctcacatcggacatgacatggcctgacaatgtgtttataagtggaggcaatcctcacatcacaagtcggttttgtggggttgtgttagac 6400638  T
Q  187 ccaac 191  Q
    |||||    
T  6400637 ccaac 6400633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 8567039 - 8566960
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||||| |||||||| |||| |||||||||||||  |||||| ||| |||||||||| |||||| | |||||||||    
T  8567039 caatgtgtttataagtggga-caatcctcacctcacaaaccggttttgtggggttgtgttaggcccaaccacgatttctaa 8566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 24554084 - 24554200
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| |||  ||| |||||| |||| ||||||| |||||  |||||||||||   |||||| |||||||||||||| |    
T  24554084 tgttaagagtcccacatcggataggagatggtctgacaatatatttataagtgggggcaatcttcacctcacaagccggttttgtggagttgtgttagtc 24554183  T
Q  187 ccaacgatgatttctaa 203  Q
     |||| || ||||||||    
T  24554184 tcaaccataatttctaa 24554200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 6054413 - 6054488
Alignment:
Q  130 tttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| ||||||| ||||| |||||||||||||  | |||| | | ||||||||||||||||| | |||||||||||    
T  6054413 tttataagtgggggcaatcctcacctcacaaaccgattttgtagggttgtgttagacccaaccacgatttctaaga 6054488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 11721908 - 11721991
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| ||||| ||||||||| ||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  11721908 caatttgtttataagtgggggcaatcctcacctcataagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 11721991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 13353168 - 13353287
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||| ||||   |||||| ||| |||||||||| |    
T  13353168 tgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgttaggc 13353267  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| |  |||||||||||    
T  13353268 ccaaccaccatttctaagat 13353287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 33796293 - 33796412
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||| ||||   |||||| ||| |||||||||| |    
T  33796293 tgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgttaggc 33796392  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| |  |||||||||||    
T  33796393 ccaaccaccatttctaagat 33796412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 11085545 - 11085667
Alignment:
Q  84 gtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgtta 183  Q
    ||||||||| |||||||||||   ||||| ||| || | ||||||||||| ||||||| ||||| ||||| ||||||   |||||| ||  |||||||||    
T  11085545 gtatgttaatagtctcacatcgggtaggagatggcccgacaatatgtttataagtgggggcaattctcacttcacaagccggttttgtgcggttgtgtta 11085644  T
Q  184 gacccaacgatgatttctaagat 206  Q
    |  ||||  | ||||||||||||    
T  11085645 ggtccaatcacgatttctaagat 11085667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 27653215 - 27653300
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| | ||| |||||||||||| | |||||| |||  ||||||||| |||||| | |||||||||    
T  27653215 cctgacaatttgtttataagtgggggaaatcctcacctcacaagtcggttttgtgggattgtgttaggcccaaccacgatttctaa 27653300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 27413538 - 27413667
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    |||||||||| ||||||||||| ||||||  |||||  ||| |||| ||||||||||| ||||||  ||||| |||||||||||||| |||||||||  |    
T  27413538 gtgagagggtgtgttaaaagtcccacatcgcataggtgatggcctgacaatatgtttataagtggaggcaatcctcacctcacaaatcggttttatgagg 27413637  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| | |||| |||||||||||||    
T  27413638 ttgtgttaggctcaaccatgatttctaaga 27413667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 4113123 - 4113004
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    ||||||||||| ||||||  || ||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  4113123 tgttaaaagtcccacatcggatgggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 4113024  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  4113023 ccaaccacgatttctaagat 4113004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 25145613 - 25145482
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||||||||||  |||||  |||  ||| |||| ||||||  |||||| ||||| |||||||||||| | |||||| ||  |    
T  25145613 gtgagggggtgtgttaagagtctcacatcggataggtgatggtctgacaatgtgtttattagtgggggcaatcctcacctcacaagtcggttttgtgagg 25145514  T
Q  176 ttgtgttagacccaacgatgatttctaagata 207  Q
    |||||||||||||||| | |||||||||||||    
T  25145513 ttgtgttagacccaaccacgatttctaagata 25145482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 40079139 - 40079237
Alignment:
Q  107 ataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||||| |||||||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | |||||||||||    
T  40079139 ataggagatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaaga 40079237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 41035944 - 41035826
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||| ||  |||||| ||| |||||||||||||||| ||||||| ||||| ||||||||||||   |||||| |||  |||||||||      
T  41035944 tgttaagagtctcacgtcggataggacatggcctgccaatatgtttataagtgggggcaatcctcacctcacaagccggttttgtgggattgtgttaggt 41035845  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| | |||||||||||    
T  41035844 ccaactacgatttctaaga 41035826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 25145837 - 25145718
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||  |||||||| |||| | ||||  |||||| ||||| ||||||||||||   || ||| ||| |||||||||| |    
T  25145837 tgttaagagtctcacatcggataggtgatgacctgacaatgtatttattagtgggggcaatcctcacctcacaagccggatttgtggggttgtgttaggc 25145738  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| ||||||||||||||    
T  25145737 ccaaccatgatttctaagat 25145718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 35772220 - 35772351
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| ||||| || |||||| ||   |||||| ||| |    
T  35772220 gtgagcgggtgtgttaagagtcccacatcggataggagatggcctgacaatgtgtttataagtgggggcaatccttacctcagaagccggttttgtgggg 35772319  T
Q  176 ttgtgttagacccaacgatgatttctaagata 207  Q
    ||||||||| |||||| | |||||||||||||    
T  35772320 ttgtgttaggcccaaccacgatttctaagata 35772351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 26177105 - 26177228
Alignment:
Q  82 gggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgt 181  Q
    |||| |||||| |||| ||||||  | |||| |||||||| |||  |||||| ||||||| ||||| ||||||||| |||   ||||| ||| |||||||    
T  26177105 gggtgtgttaagagtcccacatcggacaggacatgacctgacaacgtgtttataagtgggggcaatcctcacctcaaaaaccagttttgtggggttgtgt 26177204  T
Q  182 tagacccaacgatgatttctaaga 205  Q
    ||| |||||| | |||||||||||    
T  26177205 taggcccaaccacgatttctaaga 26177228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 39348457 - 39348351
Alignment:
Q  99 cacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatt 198  Q
    ||||||| |||||| ||| | || |||  |||||| ||||||| ||||| |||||||||||||  |||||| ||| |||||||||| |||||| | ||||    
T  39348457 cacatcagataggagatggcttgacaacgtgtttataagtgggggcaatcctcacctcacaaaccggttttgtggggttgtgttaggcccaac-acgatt 39348359  T
Q  199 tctaagat 206  Q
    ||||||||    
T  39348358 tctaagat 39348351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 52650881 - 52650770
Alignment:
Q  94 agtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacga 193  Q
    |||| ||||||  |||||| ||| || | |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| |    
T  52650881 agtcccacatcggataggagatggccggacaatgtgtttataagtgggggcaatcctcacctcacaagctggttttgtggggttgtgttaggcccaacca 52650782  T
Q  194 tgatttctaaga 205  Q
    | ||||||||||    
T  52650781 taatttctaaga 52650770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 17452789 - 17452680
Alignment:
Q  94 agtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacga 193  Q
    |||| ||||||| ||| || ||| |||| |||| | |||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| |    
T  17452789 agtcccacatcagataagacatggcctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaacca 17452690  T
Q  194 tgatttctaa 203  Q
     |||||||||    
T  17452689 cgatttctaa 17452680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 30369838 - 30369921
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaa-ataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||||||| |||| || ||||| |||||||||||| ||| ||||| ||| |||||||||| |||||| | ||||||||||||    
T  30369838 caatatgtttataagtaggggcaatcctcacctcacaagata-gttttgtggggttgtgttaggcccaaccacgatttctaagat 30369921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 12489070 - 12488987
Alignment:
Q  100 acatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgtta 183  Q
    |||||| |||||| |||||||| ||||||||||| |||| ||| ||||  |||| |||||||  | |||||||| |||||||||    
T  12489070 acatcagataggagatgacctgacaatatgtttataagtcggaacaatcatcacttcacaaactgattttatggggttgtgtta 12488987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 31181589 - 31181526
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    |||||| ||||||| ||||| ||||||||||||   |||||||||| |||||||||| ||||||    
T  31181589 tgtttataagtgggggcaatcctcacctcacaagctggttttatggggttgtgttaggcccaac 31181526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 35892247 - 35892377
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    |||||||||| |||||| |||| ||||||| |||  | |||  ||| |||| | |||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  35892247 gtgagagggtgtgttaagagtcccacatcagatataagatggtctgacaatgtatttataagtgggggcaatactcacctcacaacccggttttgtgggg 35892346  T
Q  176 ttgtgttagacccaacgatgatttctaagat 206  Q
    || |||||| | |||| || |||||||||||    
T  35892347 ttctgttaggctcaaccataatttctaagat 35892377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 17412529 - 17412586
Alignment:
Q  82 gggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtg 139  Q
    |||| ||||||||||| ||||||| |||||| |||||||| |||| |||||| |||||    
T  17412529 gggtgtgttaaaagtcccacatcagataggagatgacctgacaatgtgtttataagtg 17412586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 3169769 - 3169849
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||||| ||||||| |||||  |||||||||||   |||||| ||| |||||||||| |||||| | |||||||||    
T  3169769 caatttgtttataagtgggggcaatcttcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 3169849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 35788625 - 35788745
Alignment:
Q  86 atgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    ||||||| |||| ||||||| |||||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||||||| ||||||||||     
T  35788625 atgttaagagtcccacatcagataggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttagg 35788724  T
Q  186 cccaacgatgatttctaagat 206  Q
    |||||| | ||||||||||||    
T  35788725 cccaaccacgatttctaagat 35788745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 6218395 - 6218524
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||||||||||| |||||| |||||||  |||| |||||| ||||||| |||||  |||||||||||   |||||||||||     
T  6218395 gtgagggggtgtgttaagagtctcacatcagataggagatgacctaacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttatggaa 6218494  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| | |||| | |||||||||||    
T  6218495 ttgtgttaggctcaaccacgatttctaaga 6218524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 52559533 - 52559654
Alignment:
Q  86 atgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    ||||||||||||||||||   ||| || |||||||| |||| |||||| ||||||| |||||  |||||||||||   |||||| ||| ||||||||||     
T  52559533 atgttaaaagtctcacattggatatgacatgacctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttgtggggttgtgttagg 52559632  T
Q  186 cccaacgatgatttctaagata 207  Q
    |||||| |||||||||||||||    
T  52559633 cccaaccatgatttctaagata 52559654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 28245648 - 28245527
Alignment:
Q  82 gggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgt 181  Q
    |||| |||||| |||||||||||  |||||  ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||    
T  28245648 gggtgtgttaagagtctcacatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 28245549  T
Q  182 tagacccaacgatgatttctaa 203  Q
    ||| |||||| | |||||||||    
T  28245548 taggcccaactacgatttctaa 28245527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 52559760 - 52559889
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||||| || ||||||  |||||| ||||| || |||| |||||| ||||||||||||| ||||||||||||   |||||| | |      
T  52559760 gtgagggggtgtgttaaaaatcccacatcggataggacatgacttgacaatgtgtttataagtgggagcaattctcacctcacaagccggttttgtagga 52559859  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    |||| |||| |||||| |||||||||||||    
T  52559860 ttgtattaggcccaaccatgatttctaaga 52559889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 6218178 - 6218290
Alignment:
Q  94 agtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacga 193  Q
    |||||||||||  |||||| ||| | |  ||||||||||| ||||||| |||||  |||||||||||   |||||| |||||||||||||||| |||| |    
T  6218178 agtctcacatcggataggagatggcttcacaatatgtttataagtgggggcaatcttcacctcacaagacggttttgtggagttgtgttagacacaacca 6218277  T
Q  194 tgatttctaagat 206  Q
     ||||||||||||    
T  6218278 cgatttctaagat 6218290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 18528334 - 18528214
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||| ||| || ||| | || |||| |||||| ||||||  ||||| |||||||||||||| | |||| | | |||||||||||     
T  18528334 tgttaagagtctcacatcaaatacgagatggcatggcaatgtgtttataagtggcggcaatcctcacctcacaaatcgattttgtagggttgtgttagat 18528235  T
Q  187 ccaacgatgatttctaagata 207  Q
    ||||| | |||||||||||||    
T  18528234 ccaaccacgatttctaagata 18528214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 50543684 - 50543565
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||  ||| |||| |||| ||| || ||||||| ||||| ||||||||||||   |||||| |||||||||||||| |    
T  50543684 tgttaagagtcccacatcggataggtgatggcctgacaatgtgtgtataagtgggggcaatcctcacctcacaagccggttttgtggagttgtgttaggc 50543585  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  50543584 ccaaccacgatttctaagat 50543565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 22845564 - 22845446
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||| ||| || ||| |||| |||| |||||| ||||||| | ||| ||||||||||||   |||||| ||| |||||||||| |    
T  22845564 tgttaagagtcccacatcagatatgacatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaagccggttttgtggggttgtgttaggc 22845465  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| | |||||||||||    
T  22845464 ccaaccacgatttctaaga 22845446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 39902680 - 39902562
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  39902680 tgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagctggttttgtggggttgtgttaggc 39902581  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| |  ||||||||||    
T  39902580 ccaaccaccatttctaaga 39902562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 9685635 - 9685715
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||||||| |||||||||| |||||| | |||||||||    
T  9685635 caatttgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttaggcccaaccacgatttctaa 9685715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 22231398 - 22231306
Alignment:
Q  114 atgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||||  ||||| |||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  22231398 atgacctgagaatatatttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 22231306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 21498751 - 21498878
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||   |||||  || |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  21498751 gtgagggggtgtgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 21498850  T
Q  176 ttgtgttagacccaacgatgatttctaa 203  Q
    ||||||||| |||||| | |||||||||    
T  21498851 ttgtgttaggcccaaccacgatttctaa 21498878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 21750170 - 21750055
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| ||||||||||||||||||  ||| || ||||  || |||||| |||| ||||||||||| | ||||||||||||   |||||| ||| |    
T  21750170 gtgagggggtgtgttaaaagtctcacatcggataagagatgatatgacaatatctttataagtgggagcattcctcacctcacaagccggttttgtgggg 21750071  T
Q  176 ttgtgttagacccaac 191  Q
    || |||||||| ||||    
T  21750070 ttatgttagactcaac 21750055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 36685991 - 36685873
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||| ||| ||||||||||| |||| |||||| || |||| |  || |||||||||||| |  ||||| ||| ||||| ||||||    
T  36685991 tgttaagagtcccacatca-atatgaaatgacctgacaatgtgtttataaatgggggttatcctcacctcacaagtcagttttgtggggttgtattagac 36685893  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  36685892 ccaaccacgatttctaagat 36685873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 22863441 - 22863559
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  | || | ||| |||| |||| |||||| ||||||| ||||| |||||| |||||   |||||| ||| |||||||||| |    
T  22863441 tgttaagagtctcacatcggacagaagatggcctgacaatgtgtttataagtgggggcaatcctcaccccacaagccggttttgtggggttgtgttaggc 22863540  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| | |||||||||||    
T  22863541 ccaaccacgatttctaaga 22863559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 35609787 - 35609709
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| |||||||  |||| ||||||||||||   |||||| ||| ||||||| ||||||||| ||||||||||||||    
T  35609787 tgtttataagtggggccaatcctcacctcacaagccggttttgtggggttgtgtaagacccaaccatgatttctaagat 35609709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 35788861 - 35788979
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||| | ||| |||| |||| |||||| ||||||| ||||| |||| |||||||   |||||| ||| |||||||||| |    
T  35788861 tgttaagagtcccacatcggatagaacatggcctgacaatgtgtttataagtgggggcaatcctcatctcacaagccggttttgtggggttgtgttaggc 35788960  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| | |||||||||||    
T  35788961 ccaaccacgatttctaaga 35788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 40717517 - 40717439
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| ||||||| ||||| ||||||||| || | |||||| ||| |||||||||| |||||| | ||||||||||||    
T  40717517 tgtttataagtgggggcaatcctcacctcaaaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagat 40717439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 11783909 - 11783812
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    |||||| |||||||||||  |||| ||||||| |  |||| |||||| |||| || | ||| |||||||||||||| |||||| ||| ||||||||||    
T  11783909 tgttaagagtctcacatcgaatagaaaatgactttacaatttgtttataagtaggggtaatcctcacctcacaaattggttttgtggggttgtgttag 11783812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 20821971 - 20822064
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagatattag 211  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| |||  ||||||||| |||||| | ||||||||| |||||||    
T  20821971 cctgacaatttgtttataagtgggggcaattctcacctcacaagccggttttgtgggattgtgttaggcccaaccacgatttctaatatattag 20822064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 35609566 - 35609489
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||||| ||||||| ||||| |||||||||||| | |||||| ||| ||||||| | ||||||| | |||||||||||    
T  35609566 tgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgtaacacccaaccacgatttctaaga 35609489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 35797072 - 35796975
Alignment:
Q  109 aggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| ||||| || ||||||||||| ||||||| ||||| |||||||||||||   ||||| ||| |||||||||  |||||| |  |||||||||||    
T  35797072 aggagatgacatgacaatatgtttataagtgggggcaatcctcacctcacaaaccagttttgtggggttgtgttaagcccaactaccatttctaagat 35796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 53815015 - 53814930
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| |||||||||||| | |||||| ||| |||||||||  |||||| | |||||||||    
T  53815015 cctgacaatttgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaagcccaaccacgatttctaa 53814930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 1518159 - 1518250
Alignment:
Q  115 tgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||| |||| |||||| ||||||| ||||| |||| |||||||   |||||| ||| |||||||||| || ||| | ||||||||||||    
T  1518159 tgacctgacaatttgtttataagtgggggcaatcctcagctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagat 1518250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 18528538 - 18528455
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||| |||| |||| ||||| |||||||||||||| |||||| ||   || ||||||||||||| | ||||||||||||    
T  18528538 caatgtgttaacaattgggggcaatcctcacctcacaaatcggttttgtgagattttgttagacccaaccacgatttctaagat 18528455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 22827512 - 22827623
Alignment:
Q  94 agtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacga 193  Q
    |||| ||||||  |||||| ||| |||| |||  |||||| ||||||| ||||| ||||||||||||   |||||| | | |||||||||| |||||| |    
T  22827512 agtcccacatcggataggagatggcctgacaacgtgtttataagtgggggcaatcctcacctcacaagccggttttgtcgggttgtgttaggcccaacca 22827611  T
Q  194 tgatttctaaga 205  Q
     |||||||||||    
T  22827612 cgatttctaaga 22827623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 21684965 - 21685083
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||| ||| |||| |||| |||||| ||||||||  ||| ||||||||||||   | |||| ||| |||||||||  |    
T  21684965 tgttaagagtctcacatcggataggacatggcctgacaatgtgtttataagtgggataaatcctcacctcacaagccgattttgtggggttgtgttaagc 21685064  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| |  ||||||||||    
T  21685065 ccaaccacaatttctaaga 21685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 27634198 - 27634124
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaa 161  Q
    |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| ||||| |||||||||||||    
T  27634198 tgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaaa 27634124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 6666276 - 6666219
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    |||||| || |||| ||||| ||||||||||||| ||||||| ||| |||||||||||    
T  6666276 tgtttataattgggggcaatcctcacctcacaaacaggttttgtggggttgtgttaga 6666219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 21498352 - 21498437
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| ||| |||||| |||||| | |||||||||    
T  21498352 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttatgttaggcccaaccacgatttctaa 21498437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 9685401 - 9685481
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||||| |||||||  |||| |||||||||||| | |||||| ||  |||||||||| |||||| | |||||||||    
T  9685401 caatttgtttataagtggggccaatcctcacctcacaagtcggttttgtgaggttgtgttaggcccaaccacgatttctaa 9685481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 53699021 - 53699093
Alignment:
Q  114 atgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||| ||| ||||||||||| ||||| | ||||| |||||||||||||  |  ||||||| ||||||||||||    
T  53699021 atgatctgacaatatgtttataagtgtgggcaatcctcacctcacaaaccgactttatggggttgtgttagac 53699093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 36993155 - 36993071
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagata 207  Q
    |||| |||||| |||| |||||||||||||||||||||   |||||| ||| |||||||||| |||||| |||||||||||||||    
T  36993155 caatgtgtttataagtaggagcaatgctcacctcacaagctggttttgtggggttgtgttaggcccaaccatgatttctaagata 36993071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 4506954 - 4507018
Alignment:
Q  142 agcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| |||||||||||| | |||||||||| ||||||||||||||||| | ||||||||||||    
T  4506954 agcaatcctcacctcacaagtcggttttatggggttgtgttagacccaactacgatttctaagat 4507018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 25620130 - 25620222
Alignment:
Q  114 atgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  25620130 atgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 25620222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 29469796 - 29469923
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||| ||||   |||||| |||||    
T  29469796 gtgagggggtgtgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggag 29469895  T
Q  176 ttgtgttagacccaacgatgatttctaa 203  Q
    ||||||||| |||||| | |||||||||    
T  29469896 ttgtgttaggcccaaccacgatttctaa 29469923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 36277343 - 36277224
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  | | || ||| |||| |||| |||||| ||||||| ||||| |||||||||||| | | |||| ||| |||||||||| |    
T  36277343 tgttaagagtctcacatcggacaagacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagtcgattttgtggggttgtgttagtc 36277244  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  36277243 ccaaccacgatttctaagat 36277224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 21055039 - 21054950
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagata 207  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| |  ||||||||||||    
T  21055039 cctgacaatatgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagata 21054950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 48661673 - 48661556
Alignment:
Q  86 atgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    ||||||| |||| ||||||| |||||| |||||||| |||| | |||| | ||||| ||||| ||||||||||||   |||||| ||   ||||||||||    
T  48661673 atgttaagagtcccacatcagataggagatgacctgacaatgtatttataggtgggggcaatcctcacctcacaagccggttttgtgagattgtgttaga 48661574  T
Q  186 cccaacgatgatttctaa 203  Q
    |||||| | |||||||||    
T  48661573 cccaaccacgatttctaa 48661556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 3038165 - 3038081
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagata 207  Q
    |||| |||||| ||||||| ||||| ||||| ||||||   |||||| ||| |||||||||| |||||| |||||||||||||||    
T  3038165 caatgtgtttataagtgggggcaatcctcacgtcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagata 3038081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 33996385 - 33996309
Alignment:
Q  130 tttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| ||||||| |||||  ||||||||||| | |||||| |||||||||||||| |||||| | ||||||||||||    
T  33996385 tttataagtgggggcaatcttcacctcacaagtcggttttgtggagttgtgttaggcccaaccacgatttctaagat 33996309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 26239997 - 26239914
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| ||||| |||||||||||| | ||| || ||| ||||||||||||||||| |  |||||||||||    
T  26239997 caatgtgtttataagtgggggcaatcctcacctcacaagtcggtattgtggggttgtgttagacccaaccacaatttctaagat 26239914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 6634822 - 6634940
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||   |||||  || |||| |||| |||||| ||||||| ||||| ||||||||| ||    ||||| ||| |||||||||| |    
T  6634822 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcataagctagttttgtggggttgtgttaggc 6634921  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| |||||||||||||    
T  6634922 ccaaccatgatttctaaga 6634940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 2544533 - 2544460
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    |||| |||| |||||| ||||||| ||||| |||||||||||| | |||||| ||| |||||||||| ||||||    
T  2544533 cctgacaatttgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaggcccaac 2544460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 10221777 - 10221740
Alignment:
Q  30 gaaccatccaccatttatgtccacacttcagatgtcca 67  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10221777 gaaccatccaccatttatatccacacttcagatgtcca 10221740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 15317560 - 15317637
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||||| ||||||| ||||| |||||||||||||   ||||| ||| |||||||||| |||||| || ||||||||||    
T  15317560 tgtttataagtgggggcaatcctcacctcacaaactagttttgtggtgttgtgttaggcccaaccataatttctaaga 15317637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 34027391 - 34027476
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | |||||||||    
T  34027391 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 34027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 34027547 - 34027712
Alignment:
Q  41 catttatgtccacacttcagatgtccagccctggg-gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtg 139  Q
    ||||||||| ||| |||||||||| ||  |||| | ||||| |||| |||||| |||| |||||||  ||| |  || |||| |||| |||||| |||||    
T  34027547 catttatgttcacgcttcagatgtgcaatcctgagcgtgagggggtgtgttaagagtcccacatcagttagaagttggcctgacaatttgtttataagtg 34027646  T
Q  140 ggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    || ||||| ||||| ||||||   |||||| ||| |||||||||| |||||  | |||||||||||    
T  34027647 ggggcaatcctcacttcacaagccggttttgtggggttgtgttaggcccaatcacgatttctaaga 34027712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 47710410 - 47710530
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||  ||| |||  |||| |||||| ||||||| ||||| ||||||||||||    ||||| ||| |||||||||| |    
T  47710410 tgttaagagtctcacatcggataggtgatggccttacaatgtgtttataagtgggggcaatcctcacctcacaagccagttttgtggggttgtgttaggc 47710509  T
Q  187 ccaacgatgatttctaagata 207  Q
    ||||| |  ||||||||||||    
T  47710510 ccaaccaccatttctaagata 47710530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 47722066 - 47722186
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||  ||| |||  |||| |||||| ||||||| ||||| ||||||||||||    ||||| ||| |||||||||| |    
T  47722066 tgttaagagtctcacatcggataggtgatggccttacaatgtgtttataagtgggggcaatcctcacctcacaagccagttttgtggggttgtgttaggc 47722165  T
Q  187 ccaacgatgatttctaagata 207  Q
    ||||| |  ||||||||||||    
T  47722166 ccaaccaccatttctaagata 47722186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 48243523 - 48243435
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||| |||||| ||||||| ||||| |||| || ||||   |||||| ||| ||||||||||||||||| ||||||| ||||||    
T  48243523 cctgacaatgtgtttataagtgggggcaatcctcatcttacaagccggttttgtggggttgtgttagacccaaccatgatttttaagat 48243435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 23796265 - 23796182
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| |||||  ||||||||||||| | |||| ||| |||||||||| | |||| ||||||| ||||||    
T  23796265 caatgtgtttataagtgggggcaatcatcacctcacaaattgattttgtggggttgtgttaggctcaaccatgatttttaagat 23796182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 28080632 - 28080750
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  ||| || |||||||| |||| |||||| |||| || |||||  |||| |||||| | |||||| ||| ||| |||||||     
T  28080632 tgttaagagtctcacatcggataagagatgacctgacaatgtgtttataagtagg-gcaattttcacttcacaagtcggttttgtggggttatgttagat 28080730  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  28080731 ccaaccacgatttctaagat 28080750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 36277072 - 36276989
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| |||||||  |||| ||||||||||||  |||||||||||  ||||||||| || ||| | ||||||||||||    
T  36277072 caatgtgtttataagtggggacaattctcacctcacaagcaggttttatgggattgtgttaggcctaaccacgatttctaagat 36276989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 6001552 - 6001482
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctca 157  Q
    |||||| |||| ||||||  |||| | |||||||| ||||||||||| ||||||| ||||| |||||||||    
T  6001552 tgttaagagtcccacatcggatagaagatgacctgacaatatgtttataagtgggggcaatcctcacctca 6001482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 14541070 - 14540965
Alignment:
Q  85 tatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    |||||||| |||||||||||  ||| |||||||| || ||||| | ||| ||||||| ||||| | ||||||| || | |||||| ||| ||||||||||    
T  14541070 tatgttaagagtctcacatcgaatatgaaatgacttgacaatacg-ttataagtgggggcaatccacacctcataagtcggttttgtggggttgtgttag 14540972  T
Q  185 acccaac 191  Q
     ||||||    
T  14540971 gcccaac 14540965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 21821782 - 21821892
Alignment:
Q  96 tctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatg 195  Q
    |||||||||| ||| || ||| |||| ||||||||| | ||||||| |||||  ||| ||||||||  | |||| |||  ||||||||| |||||| | |    
T  21821782 tctcacatcagatatgagatggcctgacaatatgttaataagtgggggcaatcttcatctcacaaaccgattttgtgggattgtgttaggcccaaccacg 21821881  T
Q  196 atttctaagat 206  Q
    |||||||||||    
T  21821882 atttctaagat 21821892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 46452599 - 46452716
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggag-caatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    |||||| |||| ||||||  |||||| ||||||   |||| |||||| ||||||| | |||| |||||||||||| | |||||| ||| ||||||||| |    
T  46452599 tgttaagagtcccacatcggataggacatgaccacacaatgtgtttataagtggggggcaatcctcacctcacaagttggttttgtggggttgtgtta-a 46452697  T
Q  186 cccaacgatgatttctaag 204  Q
    |||||| ||| ||||||||    
T  46452698 cccaaccatgttttctaag 46452716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 48243142 - 48243060
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||| |||||    
T  48243142 caatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttgtaaga 48243060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 43085613 - 43085536
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||||| ||||||| ||||| |||||||||||| | |||||| ||| |||||||||  | |||| | |||||||||||    
T  43085613 tgtttataagtgggggcaatcctcacctcacaagttggttttgtggggttgtgttaagctcaaccacgatttctaaga 43085536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 10903088 - 10903156
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    ||||||||||| |||| || | ||| ||||||||||||   |||||| |||||||||||||| ||||||    
T  10903088 caatatgtttataagtaggggtaatcctcacctcacaagccggttttgtggagttgtgttagccccaac 10903156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 21213117 - 21213061
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    |||||| ||||||||| |||  ||||||||||| | |||||| ||||||||||||||    
T  21213117 tgtttataagtgggagtaatcatcacctcacaagttggttttgtggagttgtgttag 21213061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 31257112 - 31257032
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||||| ||||||| |||||  ||||||||||||   ||||| ||| |||||||||||| |||| | |||||||||    
T  31257112 caatttgtttataagtgggggcaatcttcacctcacaaaccagttttgtggggttgtgttagactcaaccacgatttctaa 31257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 24532538 - 24532419
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| |||||  |||||||||||   |||||| ||| |||||||||| |    
T  24532538 tgttaagagtcccacatcggataggagatggcctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttgtggggttgtgttaggc 24532439  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| ||||||||||||||    
T  24532438 ccaaccatgatttctaagat 24532419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 18004213 - 18004091
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||| | |||| ||| |||| ||||||||||| ||||||| ||||| |||||| || || | |||||| ||  |||||||||| |    
T  18004213 tgttaagagtcccacatcagacaggacatggcctgacaatatgtttataagtgggggcaatcctcaccccataagtcggttttgtgaggttgtgttaggc 18004114  T
Q  187 ccaacgatgatttctaagatatt 209  Q
    ||||| | |||||||||||||||    
T  18004113 ccaaccaagatttctaagatatt 18004091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 19256739 - 19256587
Alignment:
Q  52 acacttcagatgtccagccctggg-gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgct 150  Q
    ||||||||||||| || ||||| | ||||| |||| |||||| |||| ||||||   |||||  || |||| |||| |||||| ||||||| ||||| ||    
T  19256739 acacttcagatgtgcaaccctgagcgtgagggggtgtgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcct 19256640  T
Q  151 cacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    ||||||||||   |||||| ||| |||||||||| |||||| | |||||||||    
T  19256639 cacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 19256587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 39053046 - 39052927
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||  ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  39053046 tgttaagagtcccacatcggataggtgatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 39052947  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  39052946 ccaacaacgatttctaagat 39052927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 19256906 - 19256821
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||  ||||||| ||| |||||||||| |||||| | |||||||||    
T  19256906 cctgacaatttgtttataagtgggggcaatcctcacctcacaagcaggttttgtggggttgtgttaggcccaaccacgatttctaa 19256821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 8084137 - 8084213
Alignment:
Q  130 tttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| ||||||| ||||| ||||||||||||   ||||||  |||||||||||||||||||| | ||||||||||||    
T  8084137 tttataagtgggggcaatcctcacctcacaagctggttttgcggagttgtgttagacccaaccacgatttctaagat 8084213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 28069474 - 28069358
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  ||| || ||| |||| |||| | |||| ||||||| ||||| |||||||||||||  | |||| |||||||||||||||     
T  28069474 tgttaagagtcccacatcggatatgacatggcctgacaatgtatttataagtgggggcaatcctcacctcacaaactgattttgtggagttgtgttagat 28069375  T
Q  187 ccaacgatgatttctaa 203  Q
    ||||| | |||||||||    
T  28069374 ccaaccacgatttctaa 28069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 5932077 - 5931962
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    |||| ||||| |||||| |||| ||||||| |||| | ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  5932077 gtgaaagggtgtgttaagagtcccacatcagatagtacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 5931978  T
Q  176 ttgtgttagacccaac 191  Q
    || |||||| ||||||    
T  5931977 ttatgttaggcccaac 5931962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 11232322 - 11232192
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||| ||||   |||||| ||| |    
T  11232322 gtgagggggtgtgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtgggg 11232223  T
Q  176 ttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||||| |||||| |  |||||||||||    
T  11232222 ttgtgttaggcccaaccaccatttctaagat 11232192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 29005851 - 29005949
Alignment:
Q  107 ataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||||| |||||||| ||||||||||| |||||||| |||| ||||| ||| ||   |  ||||||  ||||||||||||||||| | |||||||||||    
T  29005851 ataggagatgacctgacaatatgtttataagtgggaacaatcctcacttcataagccgaatttatgaggttgtgttagacccaaccacgatttctaaga 29005949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 37001360 - 37001550
Alignment:
Q  18 gtttccgccatcgaaccatccaccatttatgtccacacttcagatgtccagccctggg-gtgagagggtatgttaaa-agtctcacatcatataggaaat 115  Q
    |||||||| ||||  ||| ||| |||| || ||||| ||  |||||| ||| |||||| |||||| ||| | ||||| |||||||||||  | |||||||    
T  37001360 gtttccgctatcgggccacccatcattcatttccacgctctagatgttcagtcctgggcgtgagaaggtgttttaaagagtctcacatcggacaggaaat 37001459  T
Q  116 gacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    | |||| |||  |||||| |||||||  |||| ||||| ||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  37001460 ggcctgacaaagtgtttataagtggggacaatcctcacatcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 37001550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 24075382 - 24075302
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagatat 208  Q
    |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||| ||||    
T  24075382 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatat 24075302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 35682876 - 35682780
Alignment:
Q  109 aggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| ||| |||| |||| |||||| ||||||| ||||| |||||||| |||   |||||| ||| |||||||||| |||||| | |||||||||||    
T  35682876 aggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcgcaagccggttttgtggggttgtgttaggcccaaccacgatttctaaga 35682780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 17477021 - 17477148
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||   |||||  || |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  17477021 gtgagggggtgtgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 17477120  T
Q  176 ttgtgttagacccaacgatgatttctaa 203  Q
    ||||||||| | |||| | |||||||||    
T  17477121 ttgtgttaggctcaaccacgatttctaa 17477148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 34843120 - 34843183
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||| |||||| ||||||||||||| ||||||||||||   |||||| ||| ||||||||||||    
T  34843120 caatttgtttataagtgggagcaatcctcacctcacaagccggttttgtggggttgtgttagac 34843183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 39960158 - 39960277
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggag-caatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    |||||| |||| ||||||  |||||| ||| ||||  ||| |||||| ||||||| | |||| ||||||||||||   |||||| ||| ||||||||||     
T  39960158 tgttaagagtcccacatcggataggagatggcctgaaaatttgtttataagtggggggcaatcctcacctcacaagccggttttgtggggttgtgttagg 39960257  T
Q  186 cccaacgatgatttctaaga 205  Q
    |||||| | |||||||||||    
T  39960258 cccaaccacgatttctaaga 39960277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 41790626 - 41790744
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    ||||||||||  ||||||  |||||  |||||||| |||| |||||| |||||||  |||| ||||||||| ||   |||||| ||| |||||||||| |    
T  41790626 tgttaaaagttccacatcgaataggtgatgacctgacaatgtgtttataagtggggacaatcctcacctcataagccggttttgtgg-gttgtgttaggc 41790724  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  41790725 ccaaccacgatttctaagat 41790744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 42846723 - 42846604
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgg-gagcaatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    |||||| |||||||||||   |||||  || |||| |||| |||||| |||||| | ||||| ||||||||||||   |||||| ||| ||||||||||     
T  42846723 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtggagggcaatcctcacctcacaagccggttttgtggggttgtgttagg 42846624  T
Q  186 cccaacgatgatttctaaga 205  Q
    |||||| | |||||||||||    
T  42846623 cccaaccacgatttctaaga 42846604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 10449967 - 10450085
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||| ||| |||| |||| |||||| ||||| | ||||| ||||||||| ||   |||||| | | |||||||||| |    
T  10449967 tgttaagagtctcacatcggataggacatggcctgacaatgtgtttataagtgtgggcaatcctcacctcagaagccggttttgtagggttgtgttaggc 10450066  T
Q  187 ccaacgatgatttctaaga 205  Q
     |||| | |||||||||||    
T  10450067 tcaaccacgatttctaaga 10450085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 25325613 - 25325731
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| ||| |||  |||| |||||| ||||||| ||||| ||| ||||||||    ||||| ||||||||| |||| |    
T  25325613 tgttaagagtcccacatcggataggacatggcctaacaatgtgtttataagtgggtgcaatcctctcctcacaagccagttttgtggagttgttttaggc 25325712  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| | |||||||||||    
T  25325713 ccaaccacgatttctaaga 25325731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 37001234 - 37001312
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| | ||||| ||||| ||||||||||||   |||||| |||||||||||||| |||||| | |||||| |||||    
T  37001234 tgtttataggtgggggcaatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccacgatttcaaagat 37001312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 17469816 - 17469901
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| | |||| | |||||||||    
T  17469816 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggctcaaccacgatttctaa 17469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 4828296 - 4828364
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| ||||||    
T  4828296 caatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaac 4828364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 12688301 - 12688393
Alignment:
Q  114 atgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||| |||| |||||| ||||||| ||||| || |||||||||    ||||| ||| |||||| |||  ||||| ||||||||||||||    
T  12688301 atgacctgacaatgtgtttataagtgggggcaatccttacctcacaagccagttttgtggggttgtgataggtccaaccatgatttctaagat 12688393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 16049996 - 16050100
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    ||||||||||||||||||   |||||  || ||||  ||| |||||| |||||   ||||| |||||||||||| |  ||||| ||| ||||||||||||    
T  16049996 tgttaaaagtctcacatcggttaggagttggcctgataatttgtttataagtgaaggcaatcctcacctcacaagtcagttttgtggggttgtgttagac 16050095  T
Q  187 ccaac 191  Q
    |||||    
T  16050096 ccaac 16050100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 36917556 - 36917460
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgtta 183  Q
    |||||| |||||||||||| ||||| |||| |||| |||| | |||| ||||||| | ||| ||||| |||||| |  ||||| ||| |||||||||    
T  36917556 tgttaagagtctcacatcagataggtaatggcctgacaatgtatttataagtgggggtaatcctcacatcacaagtcagttttgtggggttgtgtta 36917460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 27133157 - 27132994
Alignment:
Q  41 catttatgtccacacttcagatgtccagccctggg-gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtg 139  Q
    ||||||||| |||||||||||||| ||  |||| | ||||| |||| |||||| |||||||||||   |||||  || |||| |||| |||||| |||||    
T  27133157 catttatgttcacacttcagatgtgcaatcctgagcgtgagggggtgtgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtg 27133058  T
Q  140 ggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
     | ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | |||||||||    
T  27133057 agggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 27132994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 41666885 - 41666756
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  41666885 gtgagggggtgtgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 41666786  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||| | |||||||||||    
T  41666785 ttgtgttaggcccaaccacgatttctaaga 41666756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 41667111 - 41666991
Alignment:
Q  86 atgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttaga 185  Q
    ||||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| ||||||||||     
T  41667111 atgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttagg 41667012  T
Q  186 cccaacgatgatttctaagat 206  Q
    |||||| | ||||||||||||    
T  41667011 cccaaccacgatttctaagat 41666991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 42295546 - 42295662
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| |||||||  |||||  || ||||  ||| |||||| ||||||||||||| ||||||||||||   |||||| |||||||||||||| |    
T  42295546 tgttaagagtcccacatcagttaggagttggcctgataatttgtttataagtgggagcaatcctcacctcacaagccggttttgtggagttgtgttaggc 42295645  T
Q  187 ccaacgatgatttctaa 203  Q
    |||||||  ||||||||    
T  42295646 ccaacgacaatttctaa 42295662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 8081242 - 8081111
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggag-caatgctcacctcacaaataggttttatgga 174  Q
    ||||| |||| |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| | |||| |||| |||||||   |||||| |||     
T  8081242 gtgagggggtgtgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtggggggcaatcctcatctcacaagccggttttgtggg 8081143  T
Q  175 gttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||||| |||||| ||||||||||||||    
T  8081142 gttgtgttaggcccaaccatgatttctaagat 8081111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 24528543 - 24528626
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| ||||||||||||||    
T  24528543 caatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagat 24528626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 24346629 - 24346499
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| | ||| ||||||||||||   |||||||||| |    
T  24346629 gtgagggggtgtgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaagccggttttatgggg 24346530  T
Q  176 ttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||||| | |||| |  |||||||||||    
T  24346529 ttgtgttaggctcaaccacaatttctaagat 24346499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 20510770 - 20510641
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| || | ||||||  |||||  ||| |||| ||||||||||| ||||||| ||||| ||||||||| |||   ||||| |||||    
T  20510770 gtgagggggtgtgttaagagccccacatcggataggtgatggcctgacaatatgtttataagtgggggcaatcctcacctcaaaaaccagttttgtggag 20510671  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||  | |||||||||||    
T  20510670 ttgtgttaggcccaaacacgatttctaaga 20510641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 13296895 - 13296987
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagatattagatac 215  Q
    |||| |||||| ||||||| ||||  |||||||||||||  |||||| |||  |||||||||||||||| | |||||||||||| || |||||    
T  13296895 caatttgtttataagtgggggcaaccctcacctcacaaaccggttttgtgggattgtgttagacccaaccacgatttctaagatcttggatac 13296987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 6637757 - 6637908
Alignment:
Q  41 catttatgtccacacttcagatgtccagccctggg-gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtg 139  Q
    ||||||||| ||| ||||| |||||||| |||| | ||||  |||| |||||| |||| ||||||   ||||| |||||||| |||| ||| || |||||    
T  6637757 catttatgttcacgcttcaaatgtccagtcctgagcgtgatggggtgtgttaagagtcccacatcggttaggagatgacctgacaatgtgtctataagtg 6637856  T
Q  140 ggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    || ||||| |||||||||||||  |||||  ||| | ||||||||| |||||    
T  6637857 ggtgcaatcctcacctcacaaaccggtttattggggctgtgttagatccaac 6637908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 25258382 - 25258299
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||||||  |||||| ||||| |||||||||||| | |||||| ||| ||||||||| || |||| | ||||||||||||    
T  25258382 caatatgtttatcagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagat 25258299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 25322172 - 25322089
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||||||  |||||| ||||| |||||||||||| | |||||| ||| ||||||||| || |||| | ||||||||||||    
T  25322172 caatatgtttatcagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagat 25322089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 24269998 - 24269869
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||| ||| |||| |||| |||||| ||||||| | ||| ||||||||||||   |||||||||| |    
T  24269998 gtgagggggtgtgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtggg-gtaatcctcacctcacaagccggttttatgggg 24269900  T
Q  176 ttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||||| | |||| |  |||||||||||    
T  24269899 ttgtgttaggctcaaccacaatttctaagat 24269869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 24531588 - 24531685
Alignment:
Q  109 aggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||||| |||| |||||| ||||||| ||||| ||||||||||||   | |||| ||| |||||||||  |||||| | ||||||||||||    
T  24531588 aggacatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagccgattttgtggggttgtgttatgcccaaccacgatttctaagat 24531685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 2063814 - 2063732
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| ||||| ||||| |||||| | |||||| ||| |||||||||| |||||| | ||||||||||||    
T  2063814 caatgtgtttataagtgggggcaatcctcac-tcacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagat 2063732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 15480325 - 15480408
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| ||| |||||| |||||| | ||||||||||||    
T  15480325 caatgtgtttataagtgggggcaatcctcacctcacaagctggttttgtggggttctgttaggcccaaccacgatttctaagat 15480408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 19705901 - 19705988
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| |||| |||||| ||||||| ||||| ||||||| | ||   |||||| |||||||||||||| |||||| | |||||||||||    
T  19705901 cctgacaatgtgtttataagtgggggcaatcctcaccttataagccggttttgtggagttgtgttaggcccaaccacgatttctaaga 19705988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 21306886 - 21306973
Alignment:
Q  119 ctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||| | |||| ||||||| ||||| ||||||||||||   ||| || |||  |||||||||||||||| | ||||||||||||    
T  21306886 ctgccaatgtatttataagtgggggcaatcctcacctcacaagccggtattgtgggattgtgttagacccaaccacgatttctaagat 21306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 21314724 - 21314811
Alignment:
Q  119 ctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||| | |||| ||||||| ||||| ||||||||||||   ||| || |||  |||||||||||||||| | ||||||||||||    
T  21314724 ctgccaatgtatttataagtgggggcaatcctcacctcacaagccggtattgtgggattgtgttagacccaaccacgatttctaagat 21314811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 24346854 - 24346735
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  ||| || ||| |||| |||| | |||| ||||||| | ||| ||||||||||||   |||||| ||| ||||||||||||    
T  24346854 tgttaagagtcccacatcgaataagacatggcctgacaatgtatttataagtgggggtaatactcacctcacaagccggttttgtggggttgtgttagac 24346755  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||| ||||||    
T  24346754 ccaaccacgatttttaagat 24346735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 25258163 - 25258092
Alignment:
Q  135 aagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  25258163 aagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 25258092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 25321953 - 25321882
Alignment:
Q  135 aagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  25321953 aagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 25321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 26137237 - 26137110
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| | |||| |||| ||||||  |||||||||||  || ||| ||||||| || |||| ||||| |||| ||||||||  |||||| ||| |    
T  26137237 gtgagggggtgtattaagagtcccacatcgaataggaaatgatatgacaacatgtttataaatgggggcaatcctcatctcacaaaccggttttgtgggg 26137138  T
Q  176 ttgtgttagacccaacgatgatttctaa 203  Q
    || ||||||||| ||| | |||||||||    
T  26137137 ttatgttagacctaaccacgatttctaa 26137110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 7607559 - 7607677
Alignment:
Q  85 tatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    |||||||| |||||||||||   ||||  ||| || | |||| |||||| ||||||   ||||  |||||||||||   |||||| ||||||||||||||    
T  7607559 tatgttaagagtctcacatcgactaggttatggcccgacaatctgtttataagtggagacaatcttcacctcacaagccggttttgtggagttgtgttag 7607658  T
Q  185 acccaacgatgatttctaa 203  Q
     |||||| |||||||||||    
T  7607659 gcccaaccatgatttctaa 7607677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 9368598 - 9368679
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaag 204  Q
    |||| |||||| ||||||  ||||| ||||||||||||   |||||| ||| |||||||||| |||||| || |||||||||    
T  9368598 caatgtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccataatttctaag 9368679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 36040591 - 36040474
Alignment:
Q  89 ttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagaccc 188  Q
    |||| ||| |||||||| |||| | |||| |||  ||| |||||| ||||||  |||||  ||||||||||| |  ||||||| | |||||||||| | |    
T  36040591 ttaagagtttcacatcagatagaagatgatctgataatgtgtttataagtggttgcaatcatcacctcacaagtttgttttatagggttgtgttaggctc 36040492  T
Q  189 aacgatgatttctaagat 206  Q
    ||| ||||||||||||||    
T  36040491 aaccatgatttctaagat 36040474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 38976936 - 38977020
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagata 207  Q
    |||| |||||| |||| ||  |||| |||||||||||||  |||||| ||||| |||||||| | |||| | |||||||||||||    
T  38976936 caatgtgtttataagttgggacaatcctcacctcacaaaccggttttgtggaggtgtgttaggcacaaccacgatttctaagata 38977020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 54368483 - 54368602
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||| | ||| ||||  ||| |||||| ||||||| ||||| ||||||||||||   |||||||||| ||||||||||||    
T  54368483 tgttaagagtcccacatccgatagaagatggcctgaaaatgtgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttagac 54368582  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  54368583 ccaaccacgatttctaagat 54368602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 16239558 - 16239677
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||  |||||| ||| |||| |||| |||||| ||||||| ||||  ||||||||||||   |||||| |||  ||||||||| |    
T  16239558 tgttaagagtctcacatcggataggacatggcctgacaatgtgtttataagtgggggcaaacctcacctcacaagccggttttgtgggattgtgttaggc 16239657  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  16239658 ccaaccacgatttctaagat 16239677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 20327935 - 20327850
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| |||||||||||    
T  20327935 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaa 20327850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 35038322 - 35038193
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||  ||| |||| |||| |||||| ||||||| | ||| ||||||||||||   |||||| ||| |    
T  35038322 gtgagggggtgtgttaagagtcccacatcggataggtgatggcctgacaatgtgtttataagtgggggaaatcctcacctcacaagccggttttgtgggg 35038223  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||| | |||||||||||    
T  35038222 ttgtgttaggcccaaccacgatttctaaga 35038193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 1723162 - 1723074
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  1723162 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 1723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 11589752 - 11589868
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||   |||||  || |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  11589752 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 11589851  T
Q  187 ccaacgatgatttctaa 203  Q
    ||||| | |||||||||    
T  11589852 ccaaccacgatttctaa 11589868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 34610558 - 34610646
Alignment:
Q  118 cctgccaatatgtttacaagtgggag-caatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| ||||||||||| ||||||| | |||| |||||||||||| | |||||| ||| ||||||||||||||||| |  ||||||||||    
T  34610558 cctgacaatatgtttataagtggggggcaatcctcacctcacaagtcggttttgtggggttgtgttagacccaaccacaatttctaaga 34610646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 54567879 - 54567978
Alignment:
Q  107 ataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| ||| |||| |||| |||||| ||||||| | ||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  54567879 ataggacatggcctgacaatgtgtttataagtgggggaaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 54567978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 4155515 - 4155644
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    |||||||||| |||||| |||| ||||||  |||||| | | |||| |||| |||||| |||||||  |||| ||||||||| ||   |||||| | | |    
T  4155515 gtgagagggtgtgttaagagtcccacatcgcataggacaaggcctgacaatgtgtttataagtggggacaatcctcacctcaaaagccggttttttaggg 4155614  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||| | |||||||||||    
T  4155615 ttgtgttaggcccaaccacgatttctaaga 4155644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 12930247 - 12930126
Alignment:
Q  85 tatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    ||||||||||||||||||||  ||| || |||||||| |||| |||| | | |||||  |||| ||||| ||||||   |||||| ||| ||||||||||    
T  12930247 tatgttaaaagtctcacatcggataagagatgacctgacaatgtgttcatatgtggggacaattctcacttcacaagccggttttgtggggttgtgttag 12930148  T
Q  185 acccaacgatgatttctaagat 206  Q
     |||||| |  |||||||||||    
T  12930147 gcccaaccaccatttctaagat 12930126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 16239814 - 16239891
Alignment:
Q  107 ataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    |||||| ||| |||| ||||||||||| ||||||| ||||  |||||||||||| | |||||| ||| ||||||||||    
T  16239814 ataggacatggcctgacaatatgtttataagtgggggcaaatctcacctcacaagtcggttttgtggggttgtgttag 16239891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 37246908 - 37246851
Alignment:
Q  149 ctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||||||||||| || ||| |||||||||||||||| |||| ||||||| ||||||    
T  37246908 ctcacctcacaaatcggatttgtggagttgtgttagactcaacaatgatttttaagat 37246851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 45828254 - 45828330
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaag 204  Q
    |||||| ||||||| |||||   ||||||||||  ||||||| ||| |||||||||| |||||| ||||||||||||    
T  45828254 tgtttataagtgggggcaatctccacctcacaagcaggttttgtggggttgtgttaggcccaaccatgatttctaag 45828330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 20327742 - 20327627
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| | || ||||||  |||||| ||| |||| |||| | |||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  20327742 gtgagcgggtgtgttaagaatcccacatcggataggacatggcctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtgggg 20327643  T
Q  176 ttgtgttagacccaac 191  Q
    ||||||||| ||||||    
T  20327642 ttgtgttaggcccaac 20327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 45139040 - 45138969
Alignment:
Q  135 aagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    ||||||| ||||| ||||||||||||   |||||| ||| ||||||| ||||||||| | ||||||||||||    
T  45139040 aagtgggggcaatcctcacctcacaagccggttttgtggggttgtgtaagacccaaccacgatttctaagat 45138969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 4155332 - 4155410
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| ||||||| ||||| ||||||||| ||   |||||| ||| |||||||||| |||||| | ||||||||||||    
T  4155332 tgtttataagtgggggcaatcctcacctcaaaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 4155410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 8018976 - 8019054
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |||||| |  |||||||||||    
T  8018976 tgtttataagtgggtgcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagat 8019054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 27086634 - 27086676
Alignment:
Q  164 ggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| |||||||||||||| |||||| ||||||||||||||    
T  27086634 ggttttgtggagttgtgttaggcccaaccatgatttctaagat 27086676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 1800225 - 1800286
Alignment:
Q  130 tttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    |||| ||||||| ||||| |||||||||||||  |||||| ||| ||||||| |||||||||    
T  1800225 tttataagtgggggcaatcctcacctcacaaaccggttttgtggggttgtgtaagacccaac 1800286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 24866220 - 24866285
Alignment:
Q  143 gcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagatat 208  Q
    ||||| ||||||||||||   |||||| ||| |||||||||| |||||| | ||||||||||||||    
T  24866220 gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatat 24866285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 50930710 - 50930771
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagaccca 189  Q
    |||||| ||||||| ||||| |||||||||||||  |||||| ||| ||||||| |||||||    
T  50930710 tgtttataagtgggggcaatcctcacctcacaaaacggttttgtggggttgtgtaagaccca 50930771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 17638233 - 17638320
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   ||||||  || |||||||||| |||||| | ||||||||||||    
T  17638233 cctgacaatttgtttataagtggg-gcaatcctcacctcacaagctggttttgaggggttgtgttaggcccaaccacgatttctaagat 17638320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 22729074 - 22729186
Alignment:
Q  94 agtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacga 193  Q
    |||| ||||||  |||||| |||  ||| |||| |||||||||||||| ||||| ||||| ||||||   |||||| ||  |||||||||| |||||| |    
T  22729074 agtcccacatcggataggagatggtctgacaatgtgtttacaagtgggggcaatcctcacttcacaagccggttttgtgaggttgtgttaggcccaacca 22729173  T
Q  194 tgatttctaagat 206  Q
      |||||||||||    
T  22729174 caatttctaagat 22729186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 5711567 - 5711438
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  | |||||||| |||| |||| |||||| ||||||| ||||| ||||||| ||||   |||||| ||| |    
T  5711567 gtgagggggtgtgttaagagtcccacatcggaaaggaaatggcctgacaatgtgtttataagtgggggcaatcctcacctaacaagccggttttgtgggg 5711468  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||| | |||||||||||    
T  5711467 ttgtgttaggcccaaccacgatttctaaga 5711438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 16419458 - 16419587
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  |||||| |||  ||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  16419458 gtgagggggtgtgttaagagtcccacatcggataggacatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 16419557  T
Q  176 ttgtgttagacccaacgatgatttctaaga 205  Q
    ||||||||| |||||| | |||||||||||    
T  16419558 ttgtgttaggcccaaccacgatttctaaga 16419587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 2029736 - 2029855
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| |||||||| |||| |||||| ||||||  ||||| ||||||||||||   |||||| ||| ||||| |||| |    
T  2029736 tgttaagagtcccacatcggataggacatgacctgacaatgtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggttgttttaggc 2029835  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  2029836 ccaaccacgatttctaagat 2029855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 28407874 - 28407791
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||| |||||||||||||| |||||| | ||||||||||||    
T  28407874 caatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccacgatttctaagat 28407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 4662198 - 4662270
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcaca 159  Q
    |||||| |||| ||||||  |||||| |||||||| ||||||||||| ||||||| ||||| |||||||||||    
T  4662198 tgttaagagtcccacatcggataggacatgacctgacaatatgtttataagtgggggcaatcctcacctcaca 4662270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 17855046 - 17854930
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||   |||||  ||||||| |||| |||||| ||||| | ||||| ||||||||||||   |||||| ||| |||||| |||||    
T  17855046 tgttaagagtctcacatcggttaggagttgacctgacaatttgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgctagac 17854947  T
Q  187 ccaacgatgatttctaa 203  Q
    ||||| | |||||||||    
T  17854946 ccaaccacgatttctaa 17854930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 14466527 - 14466408
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  | |||| ||| |||| |||| |||||| ||||||||||||| ||||||| ||||   |||||| ||| |||||||||| |    
T  14466527 tgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggagcaatcctcaccttacaagccggttttgtggggttgtgttaggc 14466428  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| |  |||||||||||    
T  14466427 ccaaccaccatttctaagat 14466408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 40379561 - 40379442
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||  ||| |||| || | |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  40379561 tgttaagagtcccacatcggataggtgatggcctgacagtgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 40379462  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  40379461 ccaaccacgatttctaagat 40379442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 2029960 - 2030090
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| |||||| |||| ||||||  | | || |||||||| |||| |||||| ||||||  ||||| ||||||||||||   |||||| ||| |    
T  2029960 gtgagggggtgtgttaagagtcccacatcggacatgacatgacctgacaatgtgtttataagtggaggcaatcctcacctcacaagccggttttgtgggg 2030059  T
Q  176 ttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||| |||||| | ||||||||||||    
T  2030060 ttgttttaggcccaaccacgatttctaagat 2030090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 40379326 - 40379208
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||  ||| |||| || | |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| |    
T  40379326 tgttaagagtcccacatcggataggtgatggcctgacagtgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 40379227  T
Q  187 ccaacgatgatttctaaga 205  Q
    ||||| | |||||||||||    
T  40379226 ccaaccacgatttctaaga 40379208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 5509082 - 5509162
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaa 203  Q
    |||| |||||| ||||||| | ||| ||||||||||||   |||||| ||| |||||||||| |||||| |||||||||||    
T  5509082 caatttgtttataagtgggggtaatcctcacctcacaagctggttttgtggggttgtgttaggcccaaccatgatttctaa 5509162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 17525227 - 17525099
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    ||||| |||| ||||||||||||||||||  | |||| |||||||| |||| |||||| || |||||  ||| |||||| |||||   |||||| ||||     
T  17525227 gtgagtgggtgtgttaaaagtctcacatcggacaggacatgacctgacaatgtgtttataaatgggaagaatcctcaccgcacaagccggttttgtggaa 17525128  T
Q  176 ttgtgttagacccaacgatgatttctaag 204  Q
    |||||| || |||||| |  |||||||||    
T  17525127 ttgtgtcaggcccaaccacaatttctaag 17525099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 17719575 - 17719651
Alignment:
Q  129 gtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    ||||| ||||||| ||||| || ||||||||||  |||||| ||| |||||||||| |||||| | |||||||||||    
T  17719575 gtttataagtgggggcaatcctgacctcacaaaccggttttgtggggttgtgttaggcccaaccacgatttctaaga 17719651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 27897691 - 27897604
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| |||| |||||| ||||||| ||||| |||||||||||| | |||||| ||| |||||||||| |||||| |  |||||||||||    
T  27897691 cctgacaatttgtttataagtggg-gcaattctcacctcacaagtcggttttgtggggttgtgttaggcccaaccaccatttctaagat 27897604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 33606171 - 33606056
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||  |||||| ||| ||||  ||| |||||| |||| || ||||| |||||||||||||  |||||| |||| || ||||||||    
T  33606171 tgttaagagtcccacatcggataggagatggcctgaaaatgtgtttataagtaggggcaatcctcacctcacaaaccggttttgtggaatt-tgttagac 33606073  T
Q  187 ccaacgatgatttctaa 203  Q
    ||||| | |||||||||    
T  33606072 ccaaccacgatttctaa 33606056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 40718324 - 40718220
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||||||||||   |||||  ||||||  |||| |||||| ||||| | |||||  ||||||||||||  |||||| |||||||||||||| |    
T  40718324 tgttaagagtctcacatcggttaggagttgacctaacaatttgtttataagtgagggcaatcatcacctcacaaaccggttttgtggagttgtgttaggc 40718225  T
Q  187 ccaac 191  Q
    |||||    
T  40718224 ccaac 40718220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 40149127 - 40149004
Alignment:
Q  80 gagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgt 179  Q
    |||||| |||||| |||||||||||  |||| | |||||||  || | |||||| |||||||  |||| ||||||||||||   | |||| ||| |||||    
T  40149127 gagggtgtgttaagagtctcacatcggatagaagatgacctaacagtgtgtttataagtggggacaatcctcacctcacaagccgattttgtggggttgt 40149028  T
Q  180 gttagacccaacgatgatttctaa 203  Q
    |||||  ||||| |||||||||||    
T  40149027 gttaggtccaaccatgatttctaa 40149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 10523148 - 10523198
Alignment:
Q  17 agtttccgccatcgaaccatccaccatttatgtccacacttcagatgtcca 67  Q
    ||||||||  ||||| ||| ||||||||||||||||| |||||||||||||    
T  10523148 agtttccgttatcgagccacccaccatttatgtccacgcttcagatgtcca 10523198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 15124859 - 15124781
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||||| ||||| | |||||  |||| |||||| | |||||| ||| ||||||||||||||||| | ||||||||||||    
T  15124859 tgtttataagtgagggcaatcttcacttcacaattcggttttgtggggttgtgttagacccaaccacgatttctaagat 15124781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 32884072 - 32884178
Alignment:
Q  85 tatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttag 184  Q
    |||||||| |||| ||||||   |||||  || |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| ||||||||||    
T  32884072 tatgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttag 32884171  T
Q  185 acccaac 191  Q
     ||||||    
T  32884172 gcccaac 32884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 19571050 - 19570973
Alignment:
Q  128 tgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||||| ||||||| ||||| ||||||||| || | | |||| |||| ||||||||| |||||| | |||||||||||    
T  19571050 tgtttataagtgggggcaatcctcacctcataagtcgattttgtggaattgtgttaggcccaaccacgatttctaaga 19570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 37812615 - 37812542
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaa 160  Q
    |||||| |||| ||||||  ||| || |||||||| |||| |||||| ||||||| ||||| ||||||||||||    
T  37812615 tgttaagagtcccacatcggataagacatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaa 37812542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 2324243 - 2324311
Alignment:
Q  123 caatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaac 191  Q
    |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| ||||||    
T  2324243 caatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaac 2324311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 2324430 - 2324538
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggag 175  Q
    |||||||||| |||||| |||| ||||||   ||| |  || |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |    
T  2324430 gtgagagggtgtgttaagagtcccacatcggttagaagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgggg 2324529  T
Q  176 ttgtgttag 184  Q
    |||||||||    
T  2324530 ttgtgttag 2324538  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 14927291 - 14927363
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaa 190  Q
    |||| ||||||||||| ||||||| ||||| ||||||||| ||   | |||| ||||||||| ||||||||||    
T  14927291 cctgacaatatgtttataagtgggggcaatcctcacctcataagccgattttgtggagttgtattagacccaa 14927363  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 37812396 - 37812312
Alignment:
Q  76 gtgagagggtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaa 160  Q
    ||||| |||| |||||| |||| ||||||  |||||| ||| |||| |||| |||||| |||||||  |||| ||||||||||||    
T  37812396 gtgagggggtgtgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtggggacaatcctcacctcacaa 37812312  T

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Target: scaffold0542 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 5860 - 5936
Alignment:
Q  84 gtatgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaa 160  Q
    |||||||||||||||||||||| |||| | |||| ||| |||||| |||| |  |||||||||| ||||||||||||    
T  5860 gtatgttaaaagtctcacatcagatagaagatgatctgacaatatatttatatatgggagcaattctcacctcacaa 5936  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 288723 - 288656
Alignment:
Q  138 tgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaaga 205  Q
    |||| ||||| ||||||||||||   |||||| |||||||||||||| |||||| |||||||||||||    
T  288723 tgggcgcaatcctcacctcacaagctggttttgtggagttgtgttaggcccaaccatgatttctaaga 288656  T

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Target: scaffold0334 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 4515 - 4431
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttcta 202  Q
    |||| |||| |||||| ||||||| ||||| ||||||||||||   |||||| ||| |||||||||| | |||| ||||||||||    
T  4515 cctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggctcaaccatgatttcta 4431  T

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Target: scaffold0048 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 81840 - 81928
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagacccaacgatgatttctaagat 206  Q
    |||| ||||||||||| |||||||  ||||  |||||| |||| | |||||| ||| |||||||||| |||||| | ||||||||||||    
T  81840 cctgacaatatgtttataagtggggacaattttcaccttacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagat 81928  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 5622 - 5741
Alignment:
Q  87 tgttaaaagtctcacatcatataggaaatgacctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtgttagac 186  Q
    |||||| |||| ||||||| |||| | ||| | || |||| |||||| ||||||| | ||| |||| || ||||   |||||| ||| ||||||||||||    
T  5622 tgttaagagtcccacatcagatagaagatggcatgacaatgtgtttataagtgggggtaatcctcatcttacaagccggttttgtggggttgtgttagac 5721  T
Q  187 ccaacgatgatttctaagat 206  Q
    ||||| | ||||||||||||    
T  5722 ccaaccacgatttctaagat 5741  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 69619 - 69557
Alignment:
Q  118 cctgccaatatgtttacaagtgggagcaatgctcacctcacaaataggttttatggagttgtg 180  Q
    |||| |||| |||||| ||||||| ||||| |||||||||||||  |||||||||| ||||||    
T  69619 cctgacaatctgtttataagtgggggcaatcctcacctcacaaaccggttttatggggttgtg 69557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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