View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_low_3 (Length: 416)
Name: NF3782_low_3
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 207 - 400
Target Start/End: Complemental strand, 6640531 - 6640338
Alignment:
| Q |
207 |
gaagaaacttggaaaactctagcattcataagccttgttgcatcgggtatgagctctttcaatgtacccatcttctcattctgcagagcgcagacatctg |
306 |
Q |
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| T |
6640531 |
gaagaaacttggaaaactctagcattcataagccttgttgcatcgggtatgagctctttcaatgtacccatcttctcattctgcagagcgcagagatctg |
6640432 |
T |
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| Q |
307 |
caagctttcaacttgatcgagtaataaattcaaaagttaaaagtgtagagttaataattggggaaaaccaaggacaaacaagaaaccaacatca |
400 |
Q |
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| T |
6640431 |
caagctttcaacttgatcgagtaataaattcaaaagttaaaagtgtagagttaataattggggaaaaccaaggacaaacaagaaaccaacatca |
6640338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6640728 - 6640596
Alignment:
| Q |
1 |
cagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaactgctgaaacacgactcctcttctgatgcatgaaaaagctcctcatgac |
100 |
Q |
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| T |
6640728 |
cagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaac---------acgactcctcttctgatgcatgaaaaagctcctcatgac |
6640638 |
T |
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| Q |
101 |
ggcatcatcaagcatgtaagataatttatccgtctataagac |
142 |
Q |
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| T |
6640637 |
ggcatcatcaagcatgtaagataatttatccgtctataagac |
6640596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8730411 - 8730453
Alignment:
| Q |
3 |
gaggtagatgtgactgacattgtgaaaaagactccataaattg |
45 |
Q |
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| T |
8730411 |
gaggtagatgtgaatgacctggtgaaaaagactccataaattg |
8730453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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