View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_low_5 (Length: 351)
Name: NF3782_low_5
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 41335661 - 41335327
Alignment:
| Q |
16 |
aatttcactatatatatcgcaaattaaaccaatcatccaagaaaacaaactttattctattgnnnnnnnaaaaaggggcata-----atgtgtaaatatt |
110 |
Q |
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| T |
41335661 |
aatttcactatatatatcgcaaattaaaccaatcatccaagaaaacacactttattctattgtttttt-aaaaaggggcatacaccaatgtataaatatt |
41335563 |
T |
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| Q |
111 |
acgaccgaagtacatttctctttcggttgtaggcaaggggtgaacacaaaattgagacaaatcatacatgtctttaaccatattttttaaactttgatcg |
210 |
Q |
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| T |
41335562 |
acgaccgaagtacatttctctttcagatctaggcaaggggcgaacacaaaattgagacaaatcatacatgtctttaaccatatttt--aaactttgatcg |
41335465 |
T |
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| Q |
211 |
gatcaattctttacactgacatgtccttaccctgggagactacgagtaaccccaacagcgcctaacgttgcgttgccggggtcttcactttcagacacac |
310 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335464 |
gatcaattctttacactaacatgtccttaccctgggagactacgagtaaccccgacagcgcctaacgttgcgttgccggggtcttcactttcagacacac |
41335365 |
T |
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| Q |
311 |
catcaccggtttttacaatcctcatttgagtctctgct |
348 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
41335364 |
catcaccagtttttacaatcctcatttgagtctctgct |
41335327 |
T |
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