View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3782_low_8 (Length: 298)
Name: NF3782_low_8
Description: NF3782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3782_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 3045636 - 3045854
Alignment:
| Q |
19 |
ccaatcgtacttccagttcaagagttcaaa-aaagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcatt |
117 |
Q |
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| T |
3045636 |
ccaatcgtacttccagttcaagagttcaaagaaagggtgaacgaggtacttaaagggcataaatatttaattttaggattcaatgcctacatgaagcatt |
3045735 |
T |
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| Q |
118 |
gtcgaatcagactaccaattccagtcgatgataatcaacaatgaggccacgagactggttagttgttgttgctgttattattat------tactatgcaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
3045736 |
gtcgaatcagactaccaattccagtcgatgataatcaacaacgaggccacgagactggttagttgttgttattattattattattattactactatgcaa |
3045835 |
T |
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| Q |
212 |
caagagattttatcaacac |
230 |
Q |
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||||||||||||| ||||| |
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| T |
3045836 |
caagagattttatgaacac |
3045854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 33468765 - 33468633
Alignment:
| Q |
27 |
acttccagttcaagagttcaaa-aaagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatc |
125 |
Q |
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|||||||||| || | |||||| ||||| |||| ||||||||||| ||||||| |||| |||||||||||||| |||||||||||||| ||| ||| |
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| T |
33468765 |
acttccagttaaaaaattcaaagaaaggatgaataaggtacttaaaaggcataatcatttgattttgggattcaacaactacatgaagcattatcgtatc |
33468666 |
T |
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| Q |
126 |
agactaccaattccagtcgatgataatcaacaa |
158 |
Q |
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| T |
33468665 |
acactttcaattccaatcaatgatgatgaacaa |
33468633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 34604037 - 34604149
Alignment:
| Q |
27 |
acttccagttcaagagttcaaaa-aagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatc |
125 |
Q |
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| T |
34604037 |
acttccagttcaaaatttcaaaggaaggatgaaaaagttacttaaagggcataatcgtttaatttttggattcaacgcctacatgaaggatcgtcgtatc |
34604136 |
T |
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| Q |
126 |
agactaccaattc |
138 |
Q |
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| ||| ||||||| |
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| T |
34604137 |
acacttccaattc |
34604149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 34725314 - 34725426
Alignment:
| Q |
27 |
acttccagttcaagagttcaaaa-aagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatc |
125 |
Q |
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||||||||||||| | |||||| |||| |||| || |||||||||||||||| ||||||||| |||||||| |||||||||||| || |||| ||| |
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| T |
34725314 |
acttccagttcaaaatttcaaaggaaggatgaaaaagttacttaaagggcataatcgtttaatttttggattcaacgcctacatgaaggatcgtcgtatc |
34725413 |
T |
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| Q |
126 |
agactaccaattc |
138 |
Q |
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| ||| ||||||| |
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| T |
34725414 |
acacttccaattc |
34725426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 3046139 - 3046183
Alignment:
| Q |
242 |
ttccgccagttattattatgattattgtacttcacgtatgatgat |
286 |
Q |
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| T |
3046139 |
ttccgccagttattattatgattattgtacttgacatatgctgat |
3046183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 30865322 - 30865192
Alignment:
| Q |
26 |
tacttccagttcaagagttcaaa-aaagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaat |
124 |
Q |
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|||||||||||||||| ||| || ||| |||||| || ||||| ||||| || ||| ||||||| ||||||||||| ||||||||||||||| |||||| |
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| T |
30865322 |
tacttccagttcaagaattctaacaaaaggtgaatgatgtactcaaaggccagaaacatttaatcttgggattcaacacctacatgaagcattatcgaat |
30865223 |
T |
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| Q |
125 |
cagactaccaattccagtcgatgataatcaa |
155 |
Q |
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|||||| ||||| |||||||||||| ||||| |
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| T |
30865222 |
cagactgccaatcccagtcgatgatcatcaa |
30865192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 38868900 - 38868786
Alignment:
| Q |
27 |
acttccagttcaagagttcaaa-aaagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatc |
125 |
Q |
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||||||||||||||| |||||| ||| |||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
38868900 |
acttccagttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatc |
38868801 |
T |
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| Q |
126 |
agactaccaattcca |
140 |
Q |
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||||| ||||||||| |
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| T |
38868800 |
agacttccaattcca |
38868786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 39046734 - 39046822
Alignment:
| Q |
61 |
aggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgat |
149 |
Q |
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| T |
39046734 |
aggtacttctagggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgat |
39046822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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