View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3783_high_2 (Length: 396)
Name: NF3783_high_2
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3783_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 21 - 385
Target Start/End: Complemental strand, 45224419 - 45224055
Alignment:
| Q |
21 |
ccagacgaagccagccctaacaaaacaataaccgcattctcctccacaaaattctccttaatttcattaaattttgccagattcctcaaaaccgcggccg |
120 |
Q |
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| T |
45224419 |
ccagacgaagccagccctaacaaaacaataaccgcattctcctccacaaaattctccttaatttcattaaattttgccagattcctcaaaaccgcggccg |
45224320 |
T |
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| Q |
121 |
cataaccttgcgaacctggcgttccaccttgacaaatccctaacagagacgaaattccacctctagatccaatcgctctagcattatctctactcaaact |
220 |
Q |
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| T |
45224319 |
cataaccttgcgaacctggcgttccaccttgacaaatccctaacagagacgaaattccacctctagatccaatcgctctagcattatctctactcaaact |
45224220 |
T |
|
| Q |
221 |
caacgcctgaagcgcaatacaagctttctctatcgctaaaccacttcccgaatccaaaaccctaaccaaatgattcaacaacaacaaaccctccgcaagt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45224219 |
caacgcctgaagcgcaatacaagctttctctatcgctaaaccacttcccgaatccaaaaccctaaccaaatgattcaacaacaacaaaccctccgcaagt |
45224120 |
T |
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| Q |
321 |
aaattattcttcccactctctaccgtcgaaactctcgaaatagcagcaactgttttctccttcat |
385 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45224119 |
aaattattcttcccactctccaccgtcgaaactctcgaaatagcagcaactgttttctccttcat |
45224055 |
T |
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