View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3783_high_4 (Length: 366)
Name: NF3783_high_4
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3783_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 165 - 349
Target Start/End: Original strand, 26619860 - 26620046
Alignment:
| Q |
165 |
cagaaaagcctaaaagatgagtggtagaaga--ccacacccaggagaattcataagatatcttaggactctcagagaatcagtctgatcgggtggaaact |
262 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619860 |
cagagaagcctaaaagatgagtggtagaagaggccacacccaggagaattcatgagatatcttaggactctcagagaatcagtctgatcgggtggaaact |
26619959 |
T |
|
| Q |
263 |
ggtttagagtcaagaaggcctgactcagaaagaagatctaagcaatattttttctaacaaatggagatgccagctttggaatgagct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619960 |
ggtttagagtcaagaaggcctgactcagaaagaagatctaagcaatattttttctaacaaatggagatgccagctttggaatgagct |
26620046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 26619567 - 26619718
Alignment:
| Q |
1 |
ctatatcaaaatgcttagtacgttcatggaacacaaggttggctgcaacatgtagggaactttgattattaacacatgcattttgatgcaagcaatgtca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
26619567 |
ctatatccaaatgcttagtacgttcatggaacacaaggttggctgcaacatgtagggaactttgattattaacacatgcattttgttgcaagcagtgtca |
26619666 |
T |
|
| Q |
101 |
aggtctatgagaagataaagaagccaatgaagctcaccagtagctgctgcaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619667 |
aggtctatgagaagataaagaagccaatgaagctcaccagtagctgctgcaa |
26619718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 23682842 - 23682798
Alignment:
| Q |
110 |
agaagataaagaagccaatgaagctcaccagtagctgctgcaaga |
154 |
Q |
| |
|
||||||||||||||||| || || |||| |||||||||||||||| |
|
|
| T |
23682842 |
agaagataaagaagccactgcagttcacaagtagctgctgcaaga |
23682798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 37736897 - 37736941
Alignment:
| Q |
110 |
agaagataaagaagccaatgaagctcaccagtagctgctgcaaga |
154 |
Q |
| |
|
||||||||||||||||| || || |||| |||||||||||||||| |
|
|
| T |
37736897 |
agaagataaagaagccactgcagttcacaagtagctgctgcaaga |
37736941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University