View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3783_high_6 (Length: 320)

Name: NF3783_high_6
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3783_high_6
NF3783_high_6
[»] chr7 (8 HSPs)
chr7 (1-305)||(45275373-45275677)
chr7 (1-279)||(45271840-45272119)
chr7 (143-305)||(45283814-45283977)
chr7 (143-305)||(45295193-45295355)
chr7 (143-305)||(45304153-45304315)
chr7 (1-117)||(45283614-45283730)
chr7 (3-121)||(45295004-45295122)
chr7 (3-121)||(45303964-45304082)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 45275373 - 45275677
Alignment:
Q  1 tttctttgttgagtttgaacctcagggtctttaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45275373 tttctttgttgagtttgaacctcagggtctttaccatttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacggcgg 45275472  T
Q  101 agataattacctttcccttcannnnnnnaggcttactggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaac 200  Q
    |||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45275473 agataattacctttcccttcatttttttaggcttattggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaac 45275572  T
Q  201 aaaagtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45275573 aaaagtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagtt 45275672  T
Q  301 gaaac 305  Q
    |||||    
T  45275673 gaaac 45275677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 45271840 - 45272119
Alignment:
Q  1 tttctttgttgagtttgaacctcagggtctttaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcgg 100  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  45271840 tttctttgttgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacgg 45271939  T
Q  101 agataattacctttcccttcannnnnnn-aggcttactggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaa 199  Q
    |||||||||||||||||||||        | |||||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  45271940 agataattacctttcccttcattttttttacgcttataggagattattggagatccttgcagagttatgggatgatggtatggtttttataggttatcaa 45272039  T
Q  200 caaaagtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggcacataatagtcgtaaacttctc 279  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  45272040 aaaaagtttcaaccaaccaaagtaaattctatatttggcaattttttagatgataggtacgtaatagtcgtaaacttctc 45272119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 143 - 305
Target Start/End: Original strand, 45283814 - 45283977
Alignment:
Q  143 ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggca-at 241  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |||||  |    
T  45283814 ttattggagatccctgaagagttatgggatgatgttatggtttttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgt 45283913  T
Q  242 tttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaac 305  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| || |||| ||||||||    
T  45283914 tttttagatgataggcacataattgtcgtaaacttctcggttaatttaagtaatgtgttgaaac 45283977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 305
Target Start/End: Original strand, 45295193 - 45295355
Alignment:
Q  143 ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggcaatt 242  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||| || || || ||||||||| ||||||||||||||||||||||||||||||||    
T  45295193 ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt 45295292  T
Q  243 ttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaac 305  Q
    | ||| |||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||    
T  45295293 tgttaaatgataggcacataattgtcgaaaacttatcggttaattttaggaatgggttgaaac 45295355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 305
Target Start/End: Original strand, 45304153 - 45304315
Alignment:
Q  143 ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggcaatt 242  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||| || || || ||||||||| ||||||||||||||||||||||||||||||||    
T  45304153 ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt 45304252  T
Q  243 ttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaac 305  Q
    | ||| |||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||    
T  45304253 tgttaaatgataggcacataattgtcgaaaacttatcggttaattttaggaatgggttgaaac 45304315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45283614 - 45283730
Alignment:
Q  1 tttctttgttgagtttgaacctcagggtctttaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcgg 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  45283614 tttctttgttgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcgg 45283713  T
Q  101 agataattacctttccc 117  Q
    |||||||||||||||||    
T  45283714 agataattacctttccc 45283730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 45295004 - 45295122
Alignment:
Q  3 tctttgttgagtttgaacctcagggtctttaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggag 102  Q
    |||||||||||||| |||||||||||||| |||||||||| |||   ||  ||| || ||||||  ||||||||||||||| ||||||||||| ||||||    
T  45295004 tctttgttgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggag 45295103  T
Q  103 ataattacctttcccttca 121  Q
    |||||||||||||| ||||    
T  45295104 ataattacctttccattca 45295122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 45303964 - 45304082
Alignment:
Q  3 tctttgttgagtttgaacctcagggtctttaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggag 102  Q
    |||||||||||||| |||||||||||||| |||||||||| |||   ||  ||| || ||||||  ||||||||||||||| ||||||||||| ||||||    
T  45303964 tctttgttgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggag 45304063  T
Q  103 ataattacctttcccttca 121  Q
    |||||||||||||| ||||    
T  45304064 ataattacctttccattca 45304082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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