View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3783_high_7 (Length: 287)
Name: NF3783_high_7
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3783_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 35408365 - 35408091
Alignment:
| Q |
1 |
aatttgagagagactgaactcgttcatcacttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtgatgatcctgtgtat |
100 |
Q |
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| T |
35408365 |
aatttgagagagactgaactcgttcatcacttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtgatgatcctgtgtac |
35408266 |
T |
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| Q |
101 |
gcgatcgcatgctgcacacgaacaaattttattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagtaaattactaata- |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408265 |
gcgatcgcatgctgcacacgaacaaattttattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagtaaattactaatat |
35408166 |
T |
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| Q |
200 |
--ttatgatt-aaaaaacatttgtcaaatcacaacaatgtttaacaaagtttaagagtgtaagaaaagataatat |
271 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408165 |
tattatgattaaaaaaacatttgtcaaatcacaacaatgtttaacaaagtttaagagtgtaagaaaagataatat |
35408091 |
T |
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