View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3783_low_1 (Length: 534)
Name: NF3783_low_1
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3783_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 193758 - 194265
Alignment:
| Q |
1 |
acatatacctacaagtccaaatgcgtatatataaagatatagtgactttctagtgcaccaattgatccagattgcaacctaacattctttattatagtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
193758 |
acatatacctacaagtccaaatgcgtatatataaggatatagtgactttctagtgcaccaattgatccagattgcaacctaacattctttattatagtac |
193857 |
T |
|
| Q |
101 |
atacatgccactcagattattatatatatatcatctgatcattcacggaaattaattaacaaattacgagagatgaatgagattaaaggaaaaatggggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
193858 |
atacatgccactcagattattatatatatatcatctgatcattcaaggaaattaattaacaaattaagagagatgaatgagattaaagggaaaatggggt |
193957 |
T |
|
| Q |
201 |
gtgataatgatattgtagagcatgtgttccttgtatgttgtatcgttcccggcgcaaggacacgtgaaccctctattgaggctggggaagctgttggcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
193958 |
gtgataatgatattgtagagcatgtgttccttgtat-------cgttcccggcgcaaggacacgtgaaccctctattgaggctggggaagctgttggcct |
194050 |
T |
|
| Q |
301 |
caaaaggtttggcagtgactttttgcacaccagaaaagctggggcaaagagatgagaaaagctagagatttagaagaagagaaggaagttgtgataggaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
194051 |
caaaaggtttggcagtgactttttgcacactagaaa-gctggggcaaagagatgagaaaagctagagatttagaagaagagaaggaagttgtgataggaa |
194149 |
T |
|
| Q |
401 |
aaggatttattagatttgaatggtttgaagatggttgggatgagaatgaaccaaaacggcttgacttggatgtgtatttgccacagctagagagggttgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
194150 |
aaggatttattagatttgaatggtttgaagatggttgggatgaggatgaaccaaaacggcttgacttggatgtgtatttgccacaactagagatggttgg |
194249 |
T |
|
| Q |
501 |
gaaacaagtcctccct |
516 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
194250 |
gaaacaagtcctccct |
194265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University