View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3783_low_2 (Length: 443)
Name: NF3783_low_2
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3783_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 45641604 - 45641189
Alignment:
| Q |
20 |
caactaaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaagaa |
119 |
Q |
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| T |
45641604 |
caactaaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaacaa |
45641505 |
T |
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| Q |
120 |
acaccccacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaat |
219 |
Q |
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| T |
45641504 |
acacccaacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaat |
45641405 |
T |
|
| Q |
220 |
atgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactaccagttgac |
319 |
Q |
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| T |
45641404 |
atgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactactagttgac |
45641305 |
T |
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| Q |
320 |
ccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45641304 |
ccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatca |
45641205 |
T |
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| Q |
420 |
ccaccttacctatgct |
435 |
Q |
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| T |
45641204 |
ccaccttacctctgct |
45641189 |
T |
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