View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3783_low_4 (Length: 395)

Name: NF3783_low_4
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3783_low_4
NF3783_low_4
[»] chr2 (16 HSPs)
chr2 (115-309)||(30017315-30017520)
chr2 (115-309)||(30048309-30048514)
chr2 (115-309)||(30043146-30043351)
chr2 (115-309)||(30139353-30139558)
chr2 (168-303)||(30124355-30124501)
chr2 (218-309)||(30075876-30075967)
chr2 (15-113)||(44958206-44958304)
chr2 (9-113)||(33732656-33732759)
chr2 (21-113)||(37498863-37498955)
chr2 (15-113)||(16089914-16090011)
chr2 (9-111)||(3830900-3831001)
chr2 (115-166)||(30075772-30075823)
chr2 (16-92)||(14573089-14573165)
chr2 (66-118)||(37914232-37914285)
chr2 (21-113)||(6376239-6376330)
chr2 (47-113)||(36315686-36315752)
[»] chr4 (9 HSPs)
chr4 (9-113)||(3672361-3672465)
chr4 (9-113)||(28093096-28093200)
chr4 (9-113)||(6112717-6112820)
chr4 (15-113)||(7217858-7217956)
chr4 (15-113)||(44275799-44275896)
chr4 (22-113)||(49243915-49244005)
chr4 (28-113)||(21390956-21391040)
chr4 (21-112)||(35545011-35545102)
chr4 (47-113)||(46192484-46192550)
[»] chr5 (11 HSPs)
chr5 (22-113)||(13347228-13347319)
chr5 (9-113)||(39371014-39371118)
chr5 (9-113)||(2237363-2237467)
chr5 (9-113)||(14831631-14831735)
chr5 (9-113)||(40887942-40888046)
chr5 (9-98)||(9408054-9408143)
chr5 (9-113)||(42683686-42683790)
chr5 (9-111)||(27553376-27553477)
chr5 (21-113)||(31800657-31800748)
chr5 (21-113)||(1815620-1815708)
chr5 (15-115)||(4300542-4300641)
[»] chr7 (19 HSPs)
chr7 (9-113)||(26972203-26972307)
chr7 (9-113)||(34108513-34108617)
chr7 (16-113)||(36346565-36346662)
chr7 (16-113)||(29953572-29953669)
chr7 (9-113)||(45782660-45782764)
chr7 (9-113)||(28307495-28307599)
chr7 (9-112)||(30887787-30887890)
chr7 (23-113)||(7699883-7699973)
chr7 (23-113)||(7700081-7700171)
chr7 (23-113)||(7700279-7700369)
chr7 (23-113)||(7700477-7700567)
chr7 (9-113)||(34828152-34828255)
chr7 (21-113)||(5811164-5811255)
chr7 (21-113)||(13108246-13108337)
chr7 (21-113)||(31148389-31148480)
chr7 (21-113)||(42220964-42221055)
chr7 (21-113)||(46475123-46475215)
chr7 (39-113)||(42950037-42950110)
chr7 (39-112)||(21807324-21807396)
[»] chr8 (11 HSPs)
chr8 (9-113)||(42162685-42162789)
chr8 (9-106)||(44081867-44081964)
chr8 (9-113)||(31318892-31318996)
chr8 (9-113)||(10203751-10203855)
chr8 (14-113)||(43186119-43186217)
chr8 (15-113)||(12665438-12665536)
chr8 (21-113)||(18184652-18184743)
chr8 (21-113)||(30432438-30432529)
chr8 (22-113)||(36189316-36189405)
chr8 (39-113)||(33726129-33726202)
chr8 (21-113)||(38845023-38845115)
[»] chr3 (15 HSPs)
chr3 (9-113)||(22894767-22894870)
chr3 (9-112)||(36749493-36749596)
chr3 (9-113)||(36370338-36370442)
chr3 (9-113)||(44000076-44000180)
chr3 (9-113)||(34749898-34750002)
chr3 (9-113)||(48200772-48200876)
chr3 (9-113)||(21559648-21559752)
chr3 (9-113)||(46111944-46112048)
chr3 (9-113)||(51339784-51339887)
chr3 (23-113)||(29472910-29472999)
chr3 (15-113)||(30735496-30735594)
chr3 (69-113)||(50966265-50966309)
chr3 (69-113)||(51069400-51069444)
chr3 (39-113)||(39467102-39467175)
chr3 (66-113)||(38231435-38231483)
[»] scaffold0062 (1 HSPs)
scaffold0062 (9-122)||(6805-6918)
[»] chr1 (6 HSPs)
chr1 (9-113)||(2509111-2509215)
chr1 (9-113)||(46901735-46901839)
chr1 (14-113)||(34307138-34307237)
chr1 (9-112)||(39249864-39249967)
chr1 (21-112)||(19258674-19258764)
chr1 (69-113)||(28647499-28647543)
[»] chr6 (6 HSPs)
chr6 (14-113)||(15345660-15345758)
chr6 (15-113)||(3118047-3118145)
chr6 (23-113)||(3986906-3986995)
chr6 (21-113)||(14023033-14023124)
chr6 (9-113)||(24208531-24208634)
chr6 (21-113)||(13697667-13697758)
[»] scaffold0043 (1 HSPs)
scaffold0043 (9-113)||(87163-87268)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 8e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 30017315 - 30017520
Alignment:
Q  115 aaattaatatgaatatcctccaacgttctaaaatataacgtgactttgatcaataccccaaatacaatctcgggtttgttttatcatcataaatcaacta 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||    
T  30017315 aaattaatatgaatatcctccaacgttctaaaatataacgtggctttgatcagtaccccaaatacagtttagggtttgttttatcatcataaatcaacta 30017414  T
Q  215 ca-----------tataaaaatcaacgttctaaaataacgaatctcctgttttatctcgcatcttaatttttgtcaaacataaagaaatcaacaacacaa 303  Q
    ||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30017415 cacataaaaattccataaaaatcaacgttctaaaataacgaatctcctgttttatctcgcatcttaatttttatcaaacataaagaaatcaacaacacaa 30017514  T
Q  304 tcaaaa 309  Q
     |||||    
T  30017515 acaaaa 30017520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 30048514 - 30048309
Alignment:
Q  115 aaattaatatgaatatcctccaacgttctaaaatataacgtgactttgatcaataccccaaatacaatctcgggtttgttttatcatcataaatcaacta 214  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  30048514 aaattaatatgaatatccttcaacgttctaaaatataacgtggctttgatcagtaccccaaatacagtcaagggtttgttttattatcataaatcaacta 30048415  T
Q  215 catataaaaatc-----------aacgttctaaaataacgaatctcctgttttatctcgcatcttaatttttgtcaaacataaagaaatcaacaacacaa 303  Q
    || |||||||||           |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30048414 cacataaaaatcccataaaaatcaacgttctaaaataacgaatctcctgttttatctcgcatctttatttttatcaaacataaagaaatcaacaacacaa 30048315  T
Q  304 tcaaaa 309  Q
     |||||    
T  30048314 acaaaa 30048309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 30043351 - 30043146
Alignment:
Q  115 aaattaatatgaatatcctccaacgttctaaaatataacgtgactttgatcaataccccaaatacaatctcgggtttgttttatcatcataaatcaacta 214  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  30043351 aaattaatatgaatatccttcaacgttctaaaatataacgtggctttgatcagtaccccaaatacagtcaagggtttgttttattatcataaatcaacta 30043252  T
Q  215 ca-----------tataaaaatcaacgttctaaaataacgaatctcctgttttatctcgcatcttaatttttgtcaaacataaagaaatcaacaacacaa 303  Q
    ||            ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30043251 cacataaaaatcccataaaaatcaaagttctaaaataacgaatctcctgttttatctcgcatctttatttttatcaaacataaagaaatcaacaacacaa 30043152  T
Q  304 tcaaaa 309  Q
     |||||    
T  30043151 acaaaa 30043146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 30139558 - 30139353
Alignment:
Q  115 aaattaatatgaatatcctccaacgttctaaaatataacgtgactttgatcaataccccaaatacaatctcgggtttgttttatcatcataaatcaacta 214  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  30139558 aaattaatatgaatatccttcaacgttctaaaatataacgtggctttgatcagtaccccaaatacagtcaagggtttgttttattatcataaatcaacta 30139459  T
Q  215 ca-----------tataaaaatcaacgttctaaaataacgaatctcctgttttatctcgcatcttaatttttgtcaaacataaagaaatcaacaacacaa 303  Q
    ||            ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30139458 cacataaaaatcccataaaaatcaaagttctaaaataacgaatctcctgttttatctcgcatctttatttttatcaaacataaagaaatcaacaacacaa 30139359  T
Q  304 tcaaaa 309  Q
     |||||    
T  30139358 acaaaa 30139353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 30124501 - 30124355
Alignment:
Q  168 taccccaaatacaatctcgggtttgttttatcatcataaatcaacta--cata---------taaaaatcaacgttctaaaataacgaatctcctgtttt 256  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||  ||||         |||||||||||||||||||||||| |||||||||||||    
T  30124501 taccccaaatacagtctagggtttgttttatcatcataaatcaactatacataaaaatcccataaaaatcaacgttctaaaataacaaatctcctgtttt 30124402  T
Q  257 atctcgcatcttaatttttgtcaaacataaagaaatcaacaacacaa 303  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  30124401 atctcgcatcttaatttttatcaaacataaagaaatcaacaacacaa 30124355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 30075876 - 30075967
Alignment:
Q  218 ataaaaatcaacgttctaaaataacgaatctcctgttttatctcgcatcttaatttttgtcaaacataaagaaatcaacaacacaatcaaaa 309  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  30075876 ataaaaattaacgttctaaaataacaaatctcctgttttatatcgcatcttaatttttatcaaacataaagaaatcaacaacacaaacaaaa 30075967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 44958206 - 44958304
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  44958206 aaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtctacctatctttttc 44958304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 33732656 - 33732759
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| |||| |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  33732656 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatacccctaatatatg-gggtgtacataagaggtgtatgaaaaagggtgtctacctatct 33732754  T
Q  109 ttttc 113  Q
    |||||    
T  33732755 ttttc 33732759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 37498955 - 37498863
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||| |||||| ||||||||||||||||||||||||||    
T  37498955 ggtgatgatatgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtctacctatctttttc 37498863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 16089914 - 16090011
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| |||| |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  16089914 aaaaaaggtggtgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttc 16090011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 3831001 - 3830900
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| ||||| ||||||| || ||||||| ||||||| | |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  3831001 gagatgaaaagtggtgattatctgatgtaaaattactaatatacccctaacacatg-gggtgtacataagaggtgtatgaaaaagggtgtctacctatct 3830903  T
Q  109 ttt 111  Q
    |||    
T  3830902 ttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 30075772 - 30075823
Alignment:
Q  115 aaattaatatgaatatcctccaacgttctaaaatataacgtgactttgatca 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30075772 aaattaatatgaatatcctccaacgttctaaaatataacgtgactttgatca 30075823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 14573089 - 14573165
Alignment:
Q  16 aaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaa 92  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  14573089 aaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgtaaaa 14573165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 37914285 - 37914232
Alignment:
Q  66 gggtgtacataagaagtgtatgaaaaa-gggtgtctacctatctttttcaaaat 118  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||    
T  37914285 gggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttccaaat 37914232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 6376330 - 6376239
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||| ||||||  ||||||| ||||||| |||| |||||||  |||||||  || |||||| ||||||| ||||||||||||||||||    
T  6376330 ggtgaggatgtgatgtgaaattactaaaatacctctaacacatgaga-tgtacatgggaggtgtataaaaaaggatgtctacctatctttttc 6376239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 36315686 - 36315752
Alignment:
Q  47 aaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaggg-tgtctacctatctttttc 113  Q
    |||||||||| | |||||||| ||||||||||| |||||| ||||| || ||||||||||||||||||    
T  36315686 aaatacccctgacacatgagg-tgtacataagaggtgtatcaaaaaaggatgtctacctatctttttc 36315752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 3672361 - 3672465
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3672361 gagatgaaaaagggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtatctacctatct 3672460  T
Q  109 ttttc 113  Q
    |||||    
T  3672461 ttttc 3672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 28093200 - 28093096
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  28093200 gagatgaaaaagggtgatgatatgatgtaaaaatactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtctacctatct 28093101  T
Q  109 ttttc 113  Q
    |||||    
T  28093100 ttttc 28093096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 6112717 - 6112820
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| | ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  6112717 gagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccctaatacatg-gagtgtacataagaagtgtatgaaaaagagtgtctacctatct 6112815  T
Q  109 ttttc 113  Q
    |||||    
T  6112816 ttttc 6112820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 7217858 - 7217956
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||||||||||||||||| ||||||| |||||||  ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  7217858 aaaaagggtgatgatatgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgtttacctatctttttc 7217956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 44275799 - 44275896
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  44275799 aaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtacataagaggtgtatgaaaaagggtgtctatctatctttttc 44275896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 49243915 - 49244005
Alignment:
Q  22 gtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||||||| ||||||| |||||||||||||||||| | |||||||||||| |||||||||||||| ||||||| ||||||||||    
T  49243915 gtgatgatatgatgtaaaattactaaaatacccctaatacatg-gagtgtacataagaggtgtatgaaaaaggatgtctacatatctttttc 49244005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 21391040 - 21390956
Alignment:
Q  28 atatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||| ||||||| |||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  21391040 atatgatgtaaaattactaaaatacccctaacacatgagg-tgtacataaaaggtgtatgaaaaagggtgtctacctatctttttc 21390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 35545011 - 35545102
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatcttttt 112  Q
    ||||||||||||||||| ||||||| ||| ||||||||| ||||| | |||||||||||  ||||||||||||||||||||||||||||||||    
T  35545011 ggtgatgatatgatgtaaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 46192484 - 46192550
Alignment:
Q  47 aaatacccctaatacatgagggtgtacataagaagtgtatgaaaa-agggtgtctacctatctttttc 113  Q
    ||||||||||  |||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46192484 aaatacccctggtacatg-gggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttc 46192550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 13347228 - 13347319
Alignment:
Q  22 gtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13347228 gtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 13347319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 39371014 - 39371118
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39371014 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatct 39371113  T
Q  109 ttttc 113  Q
    |||||    
T  39371114 ttttc 39371118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 2237363 - 2237467
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  2237363 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtctacctatct 2237462  T
Q  109 ttttc 113  Q
    |||||    
T  2237463 ttttc 2237467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 14831631 - 14831735
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||    
T  14831631 gagatgaaaaagggtgatgatatgatgtaaaattattcaaatacccctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgtttacctatct 14831730  T
Q  109 ttttc 113  Q
    |||||    
T  14831731 ttttc 14831735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 40888046 - 40887942
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| |||| |||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  40888046 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatacctctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtctacctatct 40887947  T
Q  109 ttttc 113  Q
    |||||    
T  40887946 ttttc 40887942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 9408143 - 9408054
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgt 98  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  9408143 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatatatgggggtgtacataagaagtgtatgaaaaatggtgt 9408054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 42683686 - 42683790
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| | || |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||| |||||| ||||||    
T  42683686 gagatgaaaaaggatggtgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtctatctatct 42683785  T
Q  109 ttttc 113  Q
    |||||    
T  42683786 ttttc 42683790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 27553477 - 27553376
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||||||||||||||||| || ||||||| ||||||| |||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||| |||| |    
T  27553477 gagaagaaaaatggtgattatctgatgtaaaattactaaaatactcctaacacat-agggtgtacataagaggtgtatgaaaaagggtgtctatctattt 27553379  T
Q  109 ttt 111  Q
    |||    
T  27553378 ttt 27553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 31800657 - 31800748
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||| ||||||| |||||||||||| | ||| ||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  31800657 ggtgatgatatgatgtaaaattactaaaatacccctaacatatg-gggtgtacacaagaggtgtatgaaaaagggtgtctgcctatctttttc 31800748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 1815708 - 1815620
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||| ||||||| |||||||||||| |||| |||||||||||      | ||||||||| ||||||||||||||||||||    
T  1815708 ggtgatgatatgatgtaaaattactaaaatacccctaacacat-agggtgtacat---ttctttatgaaaaaaggtgtctacctatctttttc 1815620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 4300641 - 4300542
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttca 114  Q
    |||||||||| |||| ||||||  ||||| | ||||| |||||| |||||||| ||||||| |||  ||||| ||||||| |||||| | ||||||||||    
T  4300641 aaaaatggtggtgatgtgatgtgaaattattaaaatatccctaacacatgagg-tgtacatgagagatgtataaaaaaggatgtctatcaatctttttca 4300543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 26972307 - 26972203
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26972307 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatct 26972208  T
Q  109 ttttc 113  Q
    |||||    
T  26972207 ttttc 26972203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 34108513 - 34108617
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  34108513 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggagtgtacataagaagtgtatgaaaaagggtgtttacctatct 34108612  T
Q  109 ttttc 113  Q
    |||||    
T  34108613 ttttc 34108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 36346662 - 36346565
Alignment:
Q  16 aaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36346662 aaaaaggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttc 36346565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 29953669 - 29953572
Alignment:
Q  16 aaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||    
T  29953669 aaaagggtgatgatatgatgtaaaattactcaaatatccctaatacatggaagtctacataagaagtgtatgaaaaagggtgtctacctatctttttc 29953572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 45782764 - 45782660
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||| |||||||||||| ||||| | |||||||||| |||||||| |||||||||||||||||||||    
T  45782764 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtctacctatct 45782665  T
Q  109 ttttc 113  Q
    |||||    
T  45782664 ttttc 45782660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 28307599 - 28307495
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||| |||||||| ||| | ||| |||||||||||||| |||||||||||| | |||||||||||||    
T  28307599 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtctacctatct 28307500  T
Q  109 ttttc 113  Q
    |||||    
T  28307499 ttttc 28307495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 30887787 - 30887890
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtc-tacctatc 107  Q
    |||| |||||| ||||||||||||||||| ||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||    
T  30887787 gagatgaaaaagggtgatgatatgatgtaaaattacttaaatacctctaatacatg-gggtgtatataagaagtgtatgaaaaagggtgtcttacgtatc 30887885  T
Q  108 ttttt 112  Q
    |||||    
T  30887886 ttttt 30887890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 7699973 - 7699883
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7699973 tgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttc 7699883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 7700171 - 7700081
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7700171 tgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttc 7700081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 7700369 - 7700279
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7700369 tgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttc 7700279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 7700567 - 7700477
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7700567 tgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttc 7700477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 34828152 - 34828255
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| ||||| || ||||||||||||||| ||||||| |||||||||||| | ||| |||||| ||||||  |||||||||||||| |||||||||||||    
T  34828152 gagatgaaaagtgatgatgatatgatgtaaaattactaaaatacccctaacatatg-gggtgtgcataagtggtgtatgaaaaaggatgtctacctatct 34828250  T
Q  109 ttttc 113  Q
    |||||    
T  34828251 ttttc 34828255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 5811255 - 5811164
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||| ||||||  ||||||| |||||||||||| |||||||| |||||||  || |||||| ||||||||||||||||||||||||||    
T  5811255 ggtgaggatgtgatgtgaaattactaaaatacccctaacacatgagg-tgtacatgggaggtgtataaaaaagggtgtctacctatctttttc 5811164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 13108246 - 13108337
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||| ||||||  ||||||| |||||||||||| |||||||| ||||||| | | |||||| ||||||||||||||||||||||||||    
T  13108246 ggtgaggatgtgatgtgaaattactaaaatacccctaacacatgagg-tgtacatgaaaggtgtataaaaaagggtgtctacctatctttttc 13108337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 31148389 - 31148480
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||| ||||||| |||||  ||||| | ||| ||||||  |||||| ||||||||||||| |||||||||||||||||||    
T  31148389 ggtgatgatatgatgtaaaattactaaaataagcctaacatatg-gggtgtgtataagaggtgtatgaaaaagagtgtctacctatctttttc 31148480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 42221055 - 42220964
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||  ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||||||||| ||||||||||||||||||    
T  42221055 ggtgatgatatgatgttaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagg-tgtctacctatctttttc 42220964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 46475123 - 46475215
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccc-taatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||| ||||||  ||||||| ||||||||| ||| |||||||  ||||||| ||| |||||| ||||||||||||||||||||||||||    
T  46475123 ggtgacgatgtgatgtgaaattactaaaataccccataacacatgaga-tgtacatgagaggtgtataaaaaagggtgtctacctatctttttc 46475215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 42950110 - 42950037
Alignment:
Q  39 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||| |||||||||| | ||||| ||||||||||   | |||||| ||||||||||||||||||||||||||    
T  42950110 aattactaaaatacccctgaaacatg-gggtgtacatgctaggtgtataaaaaagggtgtctacctatctttttc 42950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 21807396 - 21807324
Alignment:
Q  39 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatcttttt 112  Q
    ||||||| |||||||||||| || || ||||||| || |||||||||| ||||||| |||| ||||||||||||    
T  21807396 aattactaaaatacccctaacacgtg-gggtgtatatgagaagtgtataaaaaaggttgtcaacctatcttttt 21807324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 42162685 - 42162789
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  42162685 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtctacctatct 42162784  T
Q  109 ttttc 113  Q
    |||||    
T  42162785 ttttc 42162789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 44081867 - 44081964
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctat 106  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44081867 gagatgaaaaagggtgatgatataatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctat 44081964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 31318892 - 31318996
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||    
T  31318892 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctaatacatgggggtgtatataagaagtgtatgaaaaatgatgtctacctatct 31318991  T
Q  109 ttttc 113  Q
    |||||    
T  31318992 ttttc 31318996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 10203751 - 10203855
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| |||| ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  10203751 gagatgaaaaagggtggtgatatgatataaaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtctacctatct 10203850  T
Q  109 ttttc 113  Q
    |||||    
T  10203851 ttttc 10203855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 43186119 - 43186217
Alignment:
Q  14 gaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||| |||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43186119 gaaaaaaggtgatgatatgatataaaattactcaaatgcccctaatacat-agggtgtacataagaagtgtatgaaaaatgatgtctacctatctttttc 43186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 12665438 - 12665536
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||    
T  12665438 aaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtctacctatctttttc 12665536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 18184652 - 18184743
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||||| || ||||||| |||||||||||| |||||||| ||||||||| | |||||||||||||| ||||||||||||||||||    
T  18184652 ggtgatgatatgatataaaattactaaaatacccctaacacatgagg-tgtacataaaaggtgtatgaaaaaggatgtctacctatctttttc 18184743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 30432438 - 30432529
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||||| ||||||| |||||||| ||||| ||| || ||||||||||| ||||||||||||||||||||| | |||||||||    
T  30432438 ggtgatgatatgatgtaaaattactaaaatacccataatatatg-ggatgtacataagaggtgtatgaaaaagggtgtctatcaatctttttc 30432529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 36189316 - 36189405
Alignment:
Q  22 gtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||| || ||||| | |||||||||||| | |||  ||||||||||||  |||||||||||||||||||||||||||||||||    
T  36189316 gtgatgatatgatataaaattattaaaatacccctaacatatg--ggtgtacataagtggtgtatgaaaaagggtgtctacctatctttttc 36189405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 33726129 - 33726202
Alignment:
Q  39 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||| |||||||||||| |||||| | |||||||  || |||||| ||||||||||||||||||||||||||    
T  33726129 aattactaaaatacccctaacacatgaag-tgtacatgggaggtgtataaaaaagggtgtctacctatctttttc 33726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 38845115 - 38845023
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||| |||||   ||||||| ||||| |||||| |||| ||||||||||| |   |||||| ||||| ||||| || |||||||||||    
T  38845115 ggtgatgatgtgatgagaaattactaaaataaccctaacacataagggtgtacatgaagggtgtataaaaaatggtgtttatctatctttttc 38845023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 22894767 - 22894870
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22894767 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatg-aaaagggtgtctatctatct 22894865  T
Q  109 ttttc 113  Q
    |||||    
T  22894866 ttttc 22894870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 36749493 - 36749596
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  36749493 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtctacctatct 36749592  T
Q  109 tttt 112  Q
    ||||    
T  36749593 tttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 36370442 - 36370338
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||    
T  36370442 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgagggtgtatataaaaagtgtatgaaaaagagtatctacctatct 36370343  T
Q  109 ttttc 113  Q
    |||||    
T  36370342 ttttc 36370338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 44000076 - 44000180
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  44000076 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggcgtacataaaaagtgtatgaaaaagagtgtctacctatct 44000175  T
Q  109 ttttc 113  Q
    |||||    
T  44000176 ttttc 44000180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 34750002 - 34749898
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||    
T  34750002 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacataggggtgtacataagaagtgtatgaaaaaggatgtctggctatct 34749903  T
Q  109 ttttc 113  Q
    |||||    
T  34749902 ttttc 34749898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 48200772 - 48200876
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||    
T  48200772 gagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccataatacatgggggtgtacataaaaagtgtatgaaaaaggatgtctacctatct 48200871  T
Q  109 ttttc 113  Q
    |||||    
T  48200872 ttttc 48200876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 21559648 - 21559752
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||| ||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||| |||||||| ||||||    
T  21559648 gagatgaaaaagggtaatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtctatctatct 21559747  T
Q  109 ttttc 113  Q
    |||||    
T  21559748 ttttc 21559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 46112048 - 46111944
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||| || |||| |||| | |||||||||||| |||||||||||||||    
T  46112048 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtctacctatct 46111949  T
Q  109 ttttc 113  Q
    |||||    
T  46111948 ttttc 46111944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 51339887 - 51339784
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||| ||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  51339887 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacctctaacacatgatg-tgtacataagaggtgtatgaaaaagggtgtctacctatct 51339789  T
Q  109 ttttc 113  Q
    |||||    
T  51339788 ttttc 51339784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 29472910 - 29472999
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||||||| ||||||| |||||||||||| ||||| |||||| ||||||  |||||||||||||| ||||||||||||||||||    
T  29472910 tgatgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttc 29472999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 30735594 - 30735496
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||||||||||||||||  ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||||||||||||||||||||||||||||    
T  30735594 aaaaagggtgatgatatgatgttaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagggtgtctacctatctttttc 30735496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 50966265 - 50966309
Alignment:
Q  69 tgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||    
T  50966265 tgtacataagaggtgtatgaaaaagaatgtctacctatctttttc 50966309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 51069400 - 51069444
Alignment:
Q  69 tgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||    
T  51069400 tgtacataagaggtgtatgaaaaagaatgtctacctatctttttc 51069444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 39467175 - 39467102
Alignment:
Q  39 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||| ||||| || ||| |||||||| |||||||  || |||||| ||||||||||| ||||||||||||||    
T  39467175 aattactaaaatatccataacacatgagg-tgtacatgggaggtgtataaaaaagggtgtgtacctatctttttc 39467102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 38231435 - 38231483
Alignment:
Q  66 gggtgtacataagaagtgtatgaaaaaggg-tgtctacctatctttttc 113  Q
    |||||||||||||| |||||| ||||| || ||||||||||||||||||    
T  38231435 gggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttc 38231483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 6805 - 6918
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6805 gagatgaaaaagggtgatgatatgatgtaaaattacttaaatatccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatctacctatct 6904  T
Q  109 ttttcaaaattaat 122  Q
    ||||| | ||||||    
T  6905 ttttccatattaat 6918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 2509111 - 2509215
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| |||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  2509111 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtctacctatct 2509210  T
Q  109 ttttc 113  Q
    |||||    
T  2509211 ttttc 2509215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 46901839 - 46901735
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||||||||||||||| |||||||||||||| ||| |||||||  |||||||||||||| ||||||||||||| |||||||||||||    
T  46901839 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtctacctatct 46901740  T
Q  109 ttttc 113  Q
    |||||    
T  46901739 ttttc 46901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 34307237 - 34307138
Alignment:
Q  14 gaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||| ||||| | |||||||||||| |||||||||||| ||||||||||||||||||||    
T  34307237 gaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttc 34307138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 39249967 - 39249864
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| | || |||||| ||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  39249967 gagatgaaaaaggatggtgatataatgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtctacctatct 39249868  T
Q  109 tttt 112  Q
    ||||    
T  39249867 tttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 19258764 - 19258674
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatcttttt 112  Q
    |||| |||| ||||||  ||||| | |||||  ||||| ||||| |||||||||| |||  ||||| |||||||||||||||||||||||||    
T  19258764 ggtggtgatgtgatgtgaaattattaaaatattcctaacacatg-gggtgtacatgagagatgtataaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 28647499 - 28647543
Alignment:
Q  69 tgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||||| |||  ||||| ||||||||||||||||||||||||||    
T  28647499 tgtacatgagagatgtataaaaaagggtgtctacctatctttttc 28647543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 15345758 - 15345660
Alignment:
Q  14 gaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||| |||||||||||||| |  |||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  15345758 gaaaaaaggtgatgatatgatatcaaattactcaaatgcccctaatacat-agggtgtacataagaagtgtatgaaaaaagatgtctacctatttttttc 15345660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 3118145 - 3118047
Alignment:
Q  15 aaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| |||| ||| |||||||| ||||||| |||||||||||||||||| | ||||||||||||  ||||||||||||| ||||||||||||||||||    
T  3118145 aaaaagggtggtgacatgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtctacctatctttttc 3118047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 3986995 - 3986906
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||| |||||||||| |||||||||||||||| ||||||||| |||| ||||||| || ||||||||||| | ||||||||||||||||||    
T  3986995 tgataatatgatgtaaaattactcaaatacccttaatacatg-gggtatacataataaatgtatgaaaaatgatgtctacctatctttttc 3986906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 14023033 - 14023124
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    ||||| ||| ||||||  ||||||| |||||||||||| |||||||| |||||||  || |||||| ||||||||||||||||||||||||||    
T  14023033 ggtgacgatgtgatgtgaaattactaaaatacccctaacacatgagg-tgtacatgggaggtgtataaaaaagggtgtctacctatctttttc 14023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 24208531 - 24208634
Alignment:
Q  9 gagaagaaaaatggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatct 108  Q
    |||| |||||| ||||| ||| ||||||  ||||||| |||||||||||| |||||| |||||| || ||| |||||| ||||||| |||||||||||||    
T  24208531 gagatgaaaaagggtgaggatgtgatgtgaaattactaaaatacccctaacacatga-ggtgtaaatgagaggtgtataaaaaaggatgtctacctatct 24208629  T
Q  109 ttttc 113  Q
    |||||    
T  24208630 ttttc 24208634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 13697667 - 13697758
Alignment:
Q  21 ggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttc 113  Q
    |||||||||||||| || ||||||| ||||| | |||| ||||| ||||||||||||| | ||||||||||| | | ||||||||||||||||    
T  13697667 ggtgatgatatgatataaaattactaaaatatctctaacacatg-gggtgtacataagtaatgtatgaaaaatgatctctacctatctttttc 13697758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 87268 - 87163
Alignment:
Q  9 gagaagaaaaatggtgatgatatg--atgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctat 106  Q
    |||| ||||||| ||||||||||   || || ||||||| |||||||||||| ||||| |||||||||||| | |||||||||||| |||||||||||||    
T  87268 gagatgaaaaatagtgatgatatataatataaaattactaaaatacccctaacacatg-gggtgtacataaaaggtgtatgaaaaaaggtgtctacctat 87170  T
Q  107 ctttttc 113  Q
    |||||||    
T  87169 ctttttc 87163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University