View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3783_low_6 (Length: 322)

Name: NF3783_low_6
Description: NF3783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3783_low_6
NF3783_low_6
[»] chr6 (5 HSPs)
chr6 (16-322)||(18131879-18132185)
chr6 (109-322)||(21535611-21535824)
chr6 (109-322)||(18133085-18133298)
chr6 (147-290)||(7033443-7033586)
chr6 (218-322)||(21395688-21395792)
[»] chr1 (11 HSPs)
chr1 (16-322)||(10583716-10584022)
chr1 (16-314)||(49123072-49123370)
chr1 (106-322)||(8089816-8090032)
chr1 (109-322)||(10582603-10582816)
chr1 (109-322)||(49121842-49122055)
chr1 (201-322)||(49122123-49122244)
chr1 (117-321)||(8788631-8788855)
chr1 (105-322)||(23541069-23541289)
chr1 (40-96)||(23541320-23541376)
chr1 (117-166)||(5721703-5721752)
chr1 (117-166)||(11359619-11359668)
[»] chr7 (7 HSPs)
chr7 (16-322)||(6082218-6082524)
chr7 (109-322)||(6081104-6081317)
chr7 (28-96)||(13078369-13078437)
chr7 (34-89)||(101502-101557)
chr7 (111-154)||(27021151-27021194)
chr7 (104-166)||(17166131-17166193)
chr7 (31-95)||(32169741-32169805)
[»] scaffold0227 (2 HSPs)
scaffold0227 (16-322)||(12035-12340)
scaffold0227 (109-322)||(10972-11192)
[»] chr5 (12 HSPs)
chr5 (16-322)||(29526135-29526447)
chr5 (109-322)||(22950166-22950379)
chr5 (109-322)||(29527349-29527560)
chr5 (136-322)||(19934486-19934672)
chr5 (109-322)||(39701685-39701896)
chr5 (109-322)||(39702915-39703126)
chr5 (199-322)||(41051025-41051152)
chr5 (28-90)||(39701943-39702005)
chr5 (109-168)||(41051194-41051253)
chr5 (117-166)||(41108828-41108877)
chr5 (117-166)||(18690887-18690936)
chr5 (217-272)||(33215264-33215321)
[»] chr2 (7 HSPs)
chr2 (109-322)||(33789782-33789995)
chr2 (117-318)||(12324744-12324965)
chr2 (28-96)||(14685395-14685463)
chr2 (28-96)||(40422219-40422287)
chr2 (28-96)||(21307251-21307315)
chr2 (217-318)||(18955376-18955479)
chr2 (117-166)||(39814383-39814432)
[»] scaffold0018 (3 HSPs)
scaffold0018 (109-322)||(177960-178173)
scaffold0018 (108-176)||(177775-177843)
scaffold0018 (111-173)||(177831-177893)
[»] chr3 (14 HSPs)
chr3 (109-322)||(54994512-54994725)
chr3 (109-322)||(7197615-7197832)
chr3 (137-322)||(2386397-2386582)
chr3 (23-166)||(35389066-35389209)
chr3 (108-322)||(45826249-45826454)
chr3 (117-322)||(592392-592617)
chr3 (108-322)||(48637635-48637869)
chr3 (107-296)||(40976663-40976872)
chr3 (28-96)||(39984047-39984115)
chr3 (256-322)||(51274436-51274502)
chr3 (31-96)||(2386598-2386663)
chr3 (108-155)||(51273604-51273651)
chr3 (117-166)||(25184588-25184637)
chr3 (217-272)||(25184672-25184729)
[»] scaffold0011 (2 HSPs)
scaffold0011 (109-322)||(205686-205899)
scaffold0011 (242-322)||(211763-211843)
[»] chr4 (6 HSPs)
chr4 (109-322)||(11961933-11962146)
chr4 (121-322)||(45638758-45638984)
chr4 (28-95)||(54641251-54641318)
chr4 (35-96)||(54938073-54938134)
chr4 (28-72)||(54641614-54641658)
chr4 (217-272)||(25542486-25542543)
[»] scaffold0026 (2 HSPs)
scaffold0026 (31-322)||(80522-80833)
scaffold0026 (108-322)||(79403-79637)
[»] chr8 (4 HSPs)
chr8 (114-322)||(40254294-40254520)
chr8 (117-166)||(36241366-36241415)
chr8 (217-272)||(36241268-36241325)
chr8 (216-322)||(2411156-2411264)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 18132185 - 18131879
Alignment:
Q  16 gctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagt 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||    
T  18132185 gctctgtcactctacttcaagttatgggaccctggtggacacttattttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagt 18132086  T
Q  116 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  18132085 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgctgtctact 18131986  T
Q  216 aaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagac 315  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  18131985 aaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattggtagggagagac 18131886  T
Q  316 caagctc 322  Q
    |||||||    
T  18131885 caagctc 18131879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 21535611 - 21535824
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21535611 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtatgtagtaattgct 21535710  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21535711 gtctactaaacttctatgtaacagctataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagg 21535810  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  21535811 gagagaccaagctc 21535824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 18133298 - 18133085
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  18133298 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 18133199  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18133198 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagg 18133099  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  18133098 gagagaccaagctc 18133085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 147 - 290
Target Start/End: Complemental strand, 7033586 - 7033443
Alignment:
Q  147 taatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagt 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||| |||||    
T  7033586 taatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgttgtctactaaacttctatgtaacagctataggacttagt 7033487  T
Q  247 attataaataagatgcagaggaaaagaaaggtattcagggattg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7033486 attataaataagatgcagaggaaaagaaaggtattcagggattg 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 21395792 - 21395688
Alignment:
Q  218 acttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagacca 317  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  21395792 acttctatgtaacagccataggatttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattggtagggagagacca 21395693  T
Q  318 agctc 322  Q
    |||||    
T  21395692 agctc 21395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 10583716 - 10584022
Alignment:
Q  16 gctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagt 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  10583716 gctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagt 10583815  T
Q  116 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  10583816 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgctgtctact 10583915  T
Q  216 aaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagac 315  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  10583916 aaacttctatgtaacagctatgggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagggagagac 10584015  T
Q  316 caagctc 322  Q
    |||||||    
T  10584016 caagctc 10584022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 49123072 - 49123370
Alignment:
Q  16 gctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagt 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  49123072 gctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagt 49123171  T
Q  116 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  49123172 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgctgtctact 49123271  T
Q  216 aaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagaga 314  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  49123272 aaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattggggtaaaggattggtagggagaga 49123370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 8090032 - 8089816
Alignment:
Q  106 tattgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  8090032 tattgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaatt 8089933  T
Q  206 gctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggt 305  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||    
T  8089932 gctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggt 8089833  T
Q  306 agggagagaccaagctc 322  Q
    |||||||||||||||||    
T  8089832 agggagagaccaagctc 8089816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 10582603 - 10582816
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  10582603 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 10582702  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  10582703 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagg 10582802  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  10582803 gagagaccaagctc 10582816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 49121842 - 49122055
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |    
T  49121842 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgaagtaattgtt 49121941  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  49121942 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattggtagg 49122041  T
Q  309 gagagaccaagctc 322  Q
    |||||| |||||||    
T  49122042 gagagatcaagctc 49122055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 49122123 - 49122244
Alignment:
Q  201 taattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacgga 300  Q
    |||||| ||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49122123 taattgttgtctgctaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaagga 49122222  T
Q  301 taggtagggagagaccaagctc 322  Q
    | ||||||||||||||||||||    
T  49122223 ttggtagggagagaccaagctc 49122244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 321
Target Start/End: Complemental strand, 8788855 - 8788631
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgttt---- 212  Q
    |||||||||||||||| || |||||||||||| |||| |||||||||||| |||||||||| |||||| ||||||| | || |||||||||||| |        
T  8788855 ataggactcctaagggaagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgctgtctgcag 8788756  T
Q  213 ------------actaaacttctatgtaacaactataggaat----tagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataa 296  Q
                ||||||||  ||||||||  |||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8788755 tagtgtttgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataa 8788656  T
Q  297 cggataggtagggagagaccaagct 321  Q
     ||||||||||||||||||||||||    
T  8788655 aggataggtagggagagaccaagct 8788631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 322
Target Start/End: Complemental strand, 23541289 - 23541069
Alignment:
Q  105 gtattgttagtaataggactcctaagggcagcagttatagaataatagtag----tttatttaataatattataaataagtaaccgttacttgtatgtag 200  Q
    |||||||||| |||||||||| || |||||| ||||| ||| || ||||||    ||||||||||| |||||||||| |||||| ||||| |||  | ||    
T  23541289 gtattgttagcaataggactcataggggcagaagttacagagtattagtagattgtttatttaata-tattataaattagtaacggttacatgt--gcag 23541193  T
Q  201 taattgctgtttactaaacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaagaaaggtattcagggattgggataacg 298  Q
    | | |||| | | |  ||||||||||||||  ||||||| | |||||||||| ||||| |||||| |||||||||| |  |||||||||||||||||| |    
T  23541192 tgactgctatctgcagaacttctatgtaactgctatagggagttagtattatgaataaagatgcaaaggaaaagaaggacattcagggattgggataatg 23541093  T
Q  299 gataggtagggagagaccaagctc 322  Q
    ||| ||||||||||||||||||||    
T  23541092 gattggtagggagagaccaagctc 23541069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 23541376 - 23541320
Alignment:
Q  40 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23541376 tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttta 23541320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 5721703 - 5721752
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    ||||||||||||||||||  ||||||| |||| |||| ||||||||||||    
T  5721703 ataggactcctaagggcataagttataaaatattagttgtttatttaata 5721752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 11359668 - 11359619
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    |||||||||||||| |||  |||||||||||| |||| ||||||||||||    
T  11359668 ataggactcctaagagcataagttatagaatattagttgtttatttaata 11359619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 6082218 - 6082524
Alignment:
Q  16 gctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagt 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  6082218 gctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagt 6082317  T
Q  116 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttact 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  6082318 aataggactcctaagggcagcagttatggaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgctgtctact 6082417  T
Q  216 aaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagac 315  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  6082418 aaacttctatgtaacagctataggacttattattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagggagagac 6082517  T
Q  316 caagctc 322  Q
    |||||||    
T  6082518 caagctc 6082524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 6081104 - 6081317
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  6081104 tgttagtaataggactcctaagggcagcagttatggaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 6081203  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  6081204 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagg 6081303  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  6081304 gagagaccaagctc 6081317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 13078369 - 13078437
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13078369 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 13078437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 101502 - 101557
Alignment:
Q  34 aagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtga 89  Q
    ||||||||||||||  ||||||| |||| | ||||||||||||||| |||||||||    
T  101502 aagttatgggacccaagtggacatttatataatccttcaccttgagtacaaggtga 101557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 27021151 - 27021194
Alignment:
Q  111 ttagtaataggactcctaagggcagcagttatagaataatagta 154  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||    
T  27021151 ttagtaataggactcctaagggcagaagttatataatattagta 27021194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 17166193 - 17166131
Alignment:
Q  104 agtattgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    ||||| |||||  ||||||||||||||| ||  |||||||||||| |||| ||||||||||||    
T  17166193 agtatcgttagatataggactcctaaggccataagttatagaatattagttgtttatttaata 17166131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 32169805 - 32169741
Alignment:
Q  31 ttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 95  Q
    ||||| ||| || ||||| |||||||||  ||| ||| |||||||||||||||||||||| ||||    
T  32169805 ttcaaattacggaaccctagtggacactattgtaatcattcaccttgaggacaaggtgaaacttt 32169741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 12035 - 12340
Alignment:
Q  16 gctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagt 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||    
T  12035 gctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttaagggggggagtattgttagt 12134  T
Q  116 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||    
T  12135 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgttgtctact 12234  T
Q  216 aaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagac 315  Q
     ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  12235 -aacttctatgtaacagctataggacttggtattataaataagatgcagaggaaaagaaagttattcagggattgggataaaggataggtagggagagac 12333  T
Q  316 caagctc 322  Q
    |||||||    
T  12334 caagctc 12340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 10972 - 11192
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtag----tttatttaataatattataaataagtaaccgttacttgtatgtagtaat 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    ||||||||||| |||||||||  |||||| |||| || | || ||||||    
T  10972 tgttagtaataggactcctaagggcagcagttatagaatattagtagattgtttatttaata-tattataaagtagtaactgttagttatgtgcagtaat 11070  T
Q  205 tgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacgga 300  Q
    |||||| |||||||||||||||||||  ||||||||     |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||    
T  11071 tgctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaagaaaagaaagatattcagggattgggataaagga 11170  T
Q  301 taggtagggagagaccaagctc 322  Q
    | ||||||||||||||||||||    
T  11171 ttggtagggagagaccaagctc 11192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 29526447 - 29526135
Alignment:
Q  16 gctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||    
T  29526447 gctctgacactctacttcaagttatgggaccctggtggacacttatgtcatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagt 29526348  T
Q  116 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtat-----gtagtaattgctgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |     ||||||||||||||    
T  29526347 aataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgttgtgtgtagtaattgctgt 29526248  T
Q  211 ttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattggga-taacggataggtaggg 309  Q
     |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  29526247 ctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggattaaaggattggtaggg 29526148  T
Q  310 agagaccaagctc 322  Q
    |||||||||||||    
T  29526147 agagaccaagctc 29526135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 22950166 - 22950379
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  22950166 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 22950265  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  22950266 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaataaaggtattcagggattgggataaaggattggtagg 22950365  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  22950366 gagagaccaagctc 22950379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 29527560 - 29527349
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||| |||||||||||||    
T  29527560 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttacttaataatattataaataagtaactgtt--ttgtgtgtagtaattgct 29527463  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  29527462 gtctactaaacttctatgtaacagctattggacttagtattttaaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattggtagg 29527363  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  29527362 gagagaccaagctc 29527349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 136 - 322
Target Start/End: Original strand, 19934486 - 19934672
Alignment:
Q  136 cagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaacta 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  19934486 cagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgccgtctactaaacttctatgtaacaacta 19934585  T
Q  236 taggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagaccaagctc 322  Q
    || || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||    
T  19934586 taagacttagtattataaataagatgcagaggaaaagaaaggcatttagggattgggataaaggattggtagggagagaccaagctc 19934672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 39701896 - 39701685
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||| |||||||||||||||||||| ||||| |||||| |||||| || |||| | |      |||| |||||| ||||||| | || ||||||||||    
T  39701896 tgttagcaataggactcctaagggcagaagttacagaatattagtagattgtttattta------aaattagtaactgttacttatgtgcagtaattgct 39701803  T
Q  209 gtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggatagg 304  Q
    || |||||||||||||||||||  ||||||||     |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||    
T  39701802 gtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattgg 39701703  T
Q  305 tagggagagaccaagctc 322  Q
    ||||||||||||||||||    
T  39701702 tagggagagaccaagctc 39701685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 39703126 - 39702915
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||| |||||||||||||||||||| ||||| |||||| |||||| || |||| | |      |||| |||||| ||||||| | || |||| |||||    
T  39703126 tgttagcaataggactcctaagggcagaagttacagaatattagtagattgtttattta------aaattagtaactgttacttatgtgcagtatttgct 39703033  T
Q  209 gtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggatagg 304  Q
    || |||||||||||||||||||  ||||||||     || |||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||| ||    
T  39703032 gtctactaaacttctatgtaactgctataggagagagtttgtattataaataagttgcaaaggaaaagaaaggcattcagggattgggataaaggatcgg 39702933  T
Q  305 tagggagagaccaagctc 322  Q
    ||||||||||||||||||    
T  39702932 tagggagagaccaagctc 39702915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 41051152 - 41051025
Alignment:
Q  199 agtaattgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggat 294  Q
    |||| ||||| | |||||||||||||||||||   |||||||     |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  41051152 agtagttgctatctactaaacttctatgtaactgatataggagagagttagtattataaataagatgcagaggaaaagacagatattcagggattgggat 41051053  T
Q  295 aacggataggtagggagagaccaagctc 322  Q
    || |||||||||||||||||||||||||    
T  41051052 aaaggataggtagggagagaccaagctc 41051025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 39702005 - 39701943
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaa 90  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39702005 tacttcaagttttgggaccctggtggacacttatattatccttcaccttgaggacaaggtgaa 39701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 41051253 - 41051194
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataat 168  Q
    ||||||||||||||||||||||||||  ||||||||||   |||| ||||||||||||||    
T  41051253 tgttagtaataggactcctaagggcataagttatagaaagctagttgtttatttaataat 41051194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 41108828 - 41108877
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    ||||||||||||||||||  |||||||||||| |||| ||||||||||||    
T  41108828 ataggactcctaagggcataagttatagaatattagttgtttatttaata 41108877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 18690887 - 18690936
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    |||||||||||||| |||  |||||||||||| |||| ||||||||||||    
T  18690887 ataggactcctaagagcataagttatagaatattagttgtttatttaata 18690936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 33215321 - 33215264
Alignment:
Q  217 aacttctatgtaacaactatag-gaattagtattataaataa-gatgcagaggaaaag 272  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||||||||||||||    
T  33215321 aacttctatgtaactgctatagtgagttagtattataaataaagatgcagaggaaaag 33215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 33789782 - 33789995
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  33789782 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 33789881  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33789882 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagg 33789981  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  33789982 gagagaccaagctc 33789995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 12324744 - 12324965
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgttt---- 212  Q
    ||||||||||||||||||| ||||||| |||| |||| |||||||||||| |||||||||| |||||  ||||||| | || |||||||| ||| |        
T  12324744 ataggactcctaagggcagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 12324843  T
Q  213 ------------actaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataa 296  Q
                ||||||||| | |||||| |||||||||     |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  12324844 tagtggttgtctactaaacttatgtgtaactactataggagagagttagtattataaataagatgcaaaggaaaagaaagctattcagggattgcgataa 12324943  T
Q  297 cggataggtagggagagaccaa 318  Q
     |||| ||||||||||||||||    
T  12324944 aggattggtagggagagaccaa 12324965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 14685395 - 14685463
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  14685395 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 14685463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 40422219 - 40422287
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  40422219 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 40422287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 21307251 - 21307315
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    |||||||||||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||    
T  21307251 tacttcaagttatgggacccaggtggacacttat----tccttcaccttgaggacaaggtgaatcttta 21307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 18955376 - 18955479
Alignment:
Q  217 aacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagaga 314  Q
    ||||| ||||||||  ||||||| | ||||| |||||||||| |||||||||||||||||  | |||| |  ||| |||||| |||| ||||||||||||    
T  18955376 aacttttatgtaactgctatagggagttagtgttataaataaagatgcagaggaaaagaagagaattcggttatttggataaaggattggtagggagaga 18955475  T
Q  315 ccaa 318  Q
    ||||    
T  18955476 ccaa 18955479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 39814383 - 39814432
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    ||||||||||||||||||  ||||||| |||| |||| ||||||||||||    
T  39814383 ataggactcctaagggcataagttataaaatattagttgtttatttaata 39814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 178173 - 177960
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  178173 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 178074  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  178073 gtctactaaatttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattggggtaaaggattggtagg 177974  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  177973 gagagaccaagctc 177960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 177775 - 177843
Alignment:
Q  108 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  177775 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaa 177843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 177893 - 177831
Alignment:
Q  111 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  177893 ttagtaataggactcctaagggcagcagttatagaataatagtagtttattttataatattat 177831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 54994512 - 54994725
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  54994512 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttatgtgtagtaattgct 54994611  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  54994612 gtctactaaacttctatgtaactgctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattggtagg 54994711  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  54994712 gagagaccaagctc 54994725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 7197615 - 7197832
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| | || ||||||||||    
T  7197615 tgttagtaataggactcctaagggcagtagttatagaataatagtagtttatttaataatattataaattagttactgttacttatgtgcagtaattgct 7197714  T
Q  209 gtttactaaacttctatgtaacaactatag----gaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggatagg 304  Q
    || ||| |||||||||||||||  ||| ||    || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||    
T  7197715 gtctacaaaacttctatgtaactgctacaggagagagttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattgg 7197814  T
Q  305 tagggagagaccaagctc 322  Q
    ||||||||||||||||||    
T  7197815 tagggagagaccaagctc 7197832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 137 - 322
Target Start/End: Complemental strand, 2386582 - 2386397
Alignment:
Q  137 agttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactat 236  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| || |||||||||||| |||||||||| ||||||||   |||    
T  2386582 agttatagaatactagttgtttatttaataatattataaataagtaactgttgcttgtctgcagtaattgctgtctactaaacttttatgtaactgttat 2386483  T
Q  237 aggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagaccaagctc 322  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  2386482 aggacttagtattataaataagatgcagaggaaaagaaaggcattcagggattgagataaaggataggtagggagagaccaagctc 2386397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 35389066 - 35389209
Alignment:
Q  23 cactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaatagga 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||  ||||||    
T  35389066 cactctacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatctttagggggggagtattgttagatatagga 35389165  T
Q  123 ctcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    |||||||| |||  ||||||| |||| |||| ||||||||||||    
T  35389166 ctcctaagtgcataagttataaaatattagttgtttatttaata 35389209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 45826454 - 45826249
Alignment:
Q  108 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgc 207  Q
    |||||||  ||||||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||| |||||| ||||||| | || |||||||      
T  45826454 ttgttagatataggactcctaagggcagaagttatagaacactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaatt-- 45826357  T
Q  208 tgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtag 307  Q
       |||  ||| |  |   |  | ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45826356 ---ttagaaaagtagtgcctgtctacta----aattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtag 45826264  T
Q  308 ggagagaccaagctc 322  Q
    |||||||||||||||    
T  45826263 ggagagaccaagctc 45826249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 592392 - 592617
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgttt---- 212  Q
    |||||||||||||||| || |||||||||||| |||| |||||||||||| |||||||||| |||||| ||||||| | || |||||||||||| |        
T  592392 ataggactcctaagggaagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgctgtctgcag 592491  T
Q  213 ------------actaaacttctatgtaacaactataggaat----tagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataa 296  Q
                ||||||||  ||||||||  |||||||| |    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  592492 tagtgcctgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcaaaggaaaagaaaggtattcagggattgggataa 592591  T
Q  297 cggataggtagggagagaccaagctc 322  Q
     |||| ||||||||||| ||||||||    
T  592592 aggattggtagggagagcccaagctc 592617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 48637869 - 48637635
Alignment:
Q  108 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgc 207  Q
    |||||||  |||||||||||||||||||  ||||||||||| |||| |||||||||||| |||||||||| ||||||  |||||| | || |||||||||    
T  48637869 ttgttagatataggactcctaagggcagaggttatagaatactagttgtttatttaatagtattataaattagtaactattacttatgtgcagtaattgc 48637770  T
Q  208 tgttt----------------actaaacttctatgtaacaactataggaat----tagtattataaataagatgcagaggaaaagaaaggtattcaggga 287  Q
    ||| |                ||||||||  ||||||||  |||||||| |    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  48637769 tgtctgcagtagtgcctgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcagaggaaaagagaggtattgaggga 48637670  T
Q  288 ttgggataacggataggtagggagagaccaagctc 322  Q
    ||||||||| |||| ||||||||||||||||||||    
T  48637669 ttgggataaaggattggtagggagagaccaagctc 48637635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 296
Target Start/End: Original strand, 40976663 - 40976872
Alignment:
Q  107 attgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattg 206  Q
    ||||||||  ||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||| |||||  ||||||| | || ||||||||    
T  40976663 attgttagatataggactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 40976762  T
Q  207 ct----------gtt------tactaaacttctatgtaacaactata----ggaattagtattataaataagatgcagaggaaaagaaaggtattcaggg 286  Q
    ||          |||      ||||||||||| |||||||  |||||    ||||||||| |||||||||||||||||||||||||||||| || |||||    
T  40976763 ctggctgcagtagttgctggctactaaacttcaatgtaactgctataggagggaattagtcttataaataagatgcagaggaaaagaaaggcatgcaggg 40976862  T
Q  287 attgggataa 296  Q
    ||||||||||    
T  40976863 attgggataa 40976872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 39984115 - 39984047
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39984115 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 39984047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 51274436 - 51274502
Alignment:
Q  256 aagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagaccaagctc 322  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  51274436 aagatgcagaggaaaagaagggcattcagggattgggataaaggataggtagggagagaccaagctc 51274502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 2386663 - 2386598
Alignment:
Q  31 ttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2386663 ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttta 2386598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 51273604 - 51273651
Alignment:
Q  108 ttgttagtaataggactcctaagggcagcagttatagaataatagtag 155  Q
    ||||||| |||||||||||||||||||| ||||| |||||| ||||||    
T  51273604 ttgttagcaataggactcctaagggcagaagttacagaatattagtag 51273651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 25184588 - 25184637
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    ||||||||| ||||||||  |||||||||||| |||| ||||||||||||    
T  25184588 ataggactcgtaagggcataagttatagaatattagttgtttatttaata 25184637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 25184672 - 25184729
Alignment:
Q  217 aacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaag 272  Q
    ||||||||||||||  ||||||| | |||||||||||||||| |||||||||||||||    
T  25184672 aacttctatgtaactgctatagggagttagtattataaataaagatgcagaggaaaag 25184729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 205899 - 205686
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  205899 tgttagtaataggactcctacgggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 205800  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||    
T  205799 gtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaagatattcagggattgggataaaggattggtagg 205700  T
Q  309 gagagaccaagctc 322  Q
    ||||||||||||||    
T  205699 gagagaccaagctc 205686  T

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Target: scaffold0011; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 211843 - 211763
Alignment:
Q  242 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagagaccaagctc 322  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  211843 ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagggagagaccaagctc 211763  T

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Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 11961933 - 11962146
Alignment:
Q  109 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  11961933 tgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgct 11962032  T
Q  209 gtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtagg 308  Q
    || ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||||    
T  11962033 gtctactaaatttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcaggcattggggtaaaggattggtagg 11962132  T
Q  309 gagagaccaagctc 322  Q
    || |||||||||||    
T  11962133 gatagaccaagctc 11962146  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 121 - 322
Target Start/End: Complemental strand, 45638984 - 45638758
Alignment:
Q  121 gactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgttt-------- 212  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||| |||||| ||||||| | ||  ||||||||||| |            
T  45638984 gactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcggtaattgctgtctgcagtagt 45638885  T
Q  213 --------actaaacttctatgtaacaactataggaa----ttagtattataa-----ataagatgcagaggaaaagaaaggtattcagggattgggata 295  Q
            ||||||||||||||||||  ||||||||     ||||||||||||     |||||||||||||||||||||||| |||||||||||||||||    
T  45638884 tgctgtcaactaaacttctatgtaactgctataggagggagttagtattataatataaataagatgcagaggaaaagaaaggcattcagggattgggata 45638785  T
Q  296 acggataggtagggagagaccaagctc 322  Q
    | || ||||||||||||||||||||||    
T  45638784 aagggtaggtagggagagaccaagctc 45638758  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 54641318 - 54641251
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 95  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  54641318 tacttcaagttatgggaccctggtggacacttctgttatccctcaccttgaggacaaggtgattcttt 54641251  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 54938134 - 54938073
Alignment:
Q  35 agttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 96  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  54938134 agttatgggacccaggtggacacttatgatatccttcaccttgaggataaggtgaatcttta 54938073  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 54641658 - 54641614
Alignment:
Q  28 tacttcaagttatgggaccctggtggacacttatgttatccttca 72  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  54641658 tacttcaagttatgggaccctggtggacacttttgttatacttca 54641614  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 25542543 - 25542486
Alignment:
Q  217 aacttctatgtaacaactatag-gaattagtattataaataa-gatgcagaggaaaag 272  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||||||||||||||    
T  25542543 aacttctatgtaactgctatagtgagttagtattataaataaagatgcagaggaaaag 25542486  T

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Target: scaffold0026 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 31 - 322
Target Start/End: Original strand, 80522 - 80833
Alignment:
Q  31 ttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaataggactcctaag 130  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||       |||||||||||  ||||||||||||||    
T  80522 ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatctttagggggggagtattgttagatataggactcctaag 80621  T
Q  131 ggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattg----------------ctgtttac 214  Q
    ||||| |||||||||||| |||| |||||||||||| |||||||||| |||||| ||||||| | || ||||||||                |||| |||    
T  80622 ggcagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgttgtctgcagtagtgcctgtctac 80721  T
Q  215 taaacttctatgtaacaactatag----gaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataacggataggtaggga 310  Q
    ||||||  ||||||||  ||||||    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  80722 taaactaatatgtaactgctataggagtgagttagtattataaataagatgcagagaaaaagaaaggtattcagggattgggataaaggataggtaggga 80821  T
Q  311 gagaccaagctc 322  Q
    ||||||||||||    
T  80822 gagaccaagctc 80833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 322
Target Start/End: Original strand, 79403 - 79637
Alignment:
Q  108 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgc 207  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||| |||||| ||||||| | || |||||||||    
T  79403 ttgttagatataggactcctaagggcagaagttatagaatactagtattttatttaatagtattataaattagtaactgttacttatgtgcagtaattgc 79502  T
Q  208 tgttt----------------actaaacttctatgtaacaactataggaat----tagtattataaataagatgcagaggaaaagaaaggtattcaggga 287  Q
    ||| |                ||||||||  ||||||||  || ||||| |    ||||||||||||||||||||||||||||| ||||||||||| |||    
T  79503 tgtctgcagtagtgcctgtctactaaactaatatgtaactgctgtaggagtgagttagtattataaataagatgcagaggaaaataaaggtattcatgga 79602  T
Q  288 ttgggataacggataggtagggagagaccaagctc 322  Q
    || |||||| ||||||||| |||||||||||||||    
T  79603 ttaggataaaggataggtacggagagaccaagctc 79637  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 114 - 322
Target Start/End: Original strand, 40254294 - 40254520
Alignment:
Q  114 gtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaaccgttacttgtatgtagtaattgctgttt- 212  Q
    ||||||||||||||||||| || || ||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||| || |||||||||||| |     
T  40254294 gtaataggactcctaagggaagaagctatagaatactagttgtttatttaataatattataaattagtaactgttacttgtgtgcagtaattgctgtctg 40254393  T
Q  213 -----------------actaaacttctatgtaacaactataggaa-ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggat 294  Q
                     ||||||||||||||||||  ||||||| | ||  |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40254394 catcaattgttatctctactaaacttctatgtaactgctatagggagttcatattataaataagatgcagaggaaaagaaagg-attcagggattgggat 40254492  T
Q  295 aacggataggtagggagagaccaagctc 322  Q
    || |||| ||||||||||||||||||||    
T  40254493 aaaggattggtagggagagaccaagctc 40254520  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 36241415 - 36241366
Alignment:
Q  117 ataggactcctaagggcagcagttatagaataatagtagtttatttaata 166  Q
    ||||||||||||||||||  |||||||||||| |||| ||||||||||||    
T  36241415 ataggactcctaagggcataagttatagaatattagttgtttatttaata 36241366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 36241325 - 36241268
Alignment:
Q  217 aacttctatgtaacaactatag-gaattagtattataaataa-gatgcagaggaaaag 272  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||||||||||||||    
T  36241325 aacttctatgtaactgctatagtgagttagtattataaataaagatgcagaggaaaag 36241268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 2411264 - 2411156
Alignment:
Q  216 aaacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaagaaaggtattcagggattgggataacggataggtagggagag 313  Q
    |||||| ||||||||  ||||||| | ||||||||||||| || | |||||||||||| |  || |||| |  ||| |||||| |||| |||||||||||    
T  2411264 aaacttttatgtaacttctatagggagttagtattataaacaaagttgcagaggaaaataggggcattcggttatttggataaaggattggtagggagag 2411165  T
Q  314 accaagctc 322  Q
    |||||||||    
T  2411164 accaagctc 2411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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