View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3784_high_13 (Length: 251)
Name: NF3784_high_13
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 16625905 - 16626004
Alignment:
| Q |
80 |
tagcaaaattattgttggaaagagaaaataatgaatnnnnnnnnnnnnggtcatccaacggtcataaacaagtcgtgcacattcgtgcttgtatggccat |
179 |
Q |
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| T |
16625905 |
tagcaaaattattgtgggaaagagaaaataatgaataaaaagaaaaaaggtcatccaacggtcataaacaagtcgttcgcattcatgcttgtatggccat |
16626004 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 16625876 - 16625906
Alignment:
| Q |
1 |
tcaacttttttgtaaagagtagtgctactta |
31 |
Q |
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| T |
16625876 |
tcaacttttttgtaaagagtagtgctactta |
16625906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 46832040 - 46831941
Alignment:
| Q |
13 |
taaagagtagtgctacttaacacgactctaaa-gcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
111 |
Q |
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| T |
46832040 |
taaagagtagtgctatgtagcacgactctaaaagcccacgaatttcgacgacacggcaatcaggttgatggcaagataaatgtgggaaagagaaaataat |
46831941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 46832227 - 46832131
Alignment:
| Q |
16 |
agagtagtgctacttaacacgactctaaa-gcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
111 |
Q |
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| T |
46832227 |
agagtagtgctatgtagcacgactctaaaagcccacgaatttcaacgacacggcaatcaggtcgatggcaagataaatgtggaaaagagaaaataat |
46832131 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 8672558 - 8672489
Alignment:
| Q |
42 |
aaagcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
111 |
Q |
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| T |
8672558 |
aaagcccacgaatttcgacgacacgacaatcaggtcgttggcaagataaatgtgggaaagagaaaataat |
8672489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 8672440 - 8672402
Alignment:
| Q |
161 |
ttcgtgcttgtatggccatcgtaccataaagcattttcc |
199 |
Q |
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| T |
8672440 |
ttcgtgcttatatggccatcgtgccataaagcattttcc |
8672402 |
T |
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