View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3784_high_17 (Length: 232)
Name: NF3784_high_17
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 36946034 - 36946236
Alignment:
| Q |
23 |
aaggcatctgcaacaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggtgatttatacatt |
122 |
Q |
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| T |
36946034 |
aaggcatctgcaacaccacttagttatgttgaaactgaggacatctgtggaaggcctttgggactcaga-tttgacaagaaaactggtgatttatacata |
36946132 |
T |
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| Q |
123 |
gcagatgcatattttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaaggagtaccgtttagatttactgatg |
222 |
Q |
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| T |
36946133 |
gcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaaccgaagcagaaggagtaccatttagatttactaatg |
36946232 |
T |
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| Q |
223 |
atgt |
226 |
Q |
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|||| |
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| T |
36946233 |
atgt |
36946236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 17768993 - 17768830
Alignment:
| Q |
35 |
acaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggtgatttatacattgcagatgcatat |
134 |
Q |
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| T |
17768993 |
acaccatttagttatgtgaagactgagcacatatgtggaaggcctttgggactcaga-ttcgacaagaaaacaggtgaattgtacattgcagatgcatat |
17768895 |
T |
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| Q |
135 |
tttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaagg |
199 |
Q |
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| T |
17768894 |
cttgggctgttgaaggtggggcccgagggaggtttagcaacatctcttgcaactgaggctgaagg |
17768830 |
T |
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