View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3784_high_18 (Length: 205)

Name: NF3784_high_18
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3784_high_18
NF3784_high_18
[»] chr2 (3 HSPs)
chr2 (18-191)||(31330573-31330746)
chr2 (18-191)||(31337294-31337467)
chr2 (20-166)||(2694672-2694805)
[»] chr8 (3 HSPs)
chr8 (20-166)||(5559164-5559297)
chr8 (120-170)||(25637223-25637273)
chr8 (18-98)||(34150017-34150098)
[»] chr3 (1 HSPs)
chr3 (20-166)||(19357899-19358032)
[»] chr5 (2 HSPs)
chr5 (20-166)||(37367646-37367779)
chr5 (20-166)||(41529793-41529926)
[»] chr4 (1 HSPs)
chr4 (18-77)||(31662697-31662756)
[»] chr7 (2 HSPs)
chr7 (96-170)||(4342653-4342727)
chr7 (20-61)||(34455281-34455322)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 31330573 - 31330746
Alignment:
Q  18 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31330573 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggtaaaagtg 31330672  T
Q  118 attattttgagaagaaatttaagttatgttgattcattagaagtataagctgtaatttcatttggcattctgtg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31330673 attattttgagaagaaatttaagttatgttgattcattagaagtataagctgttatttcatttggcattctgtg 31330746  T

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Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 31337294 - 31337467
Alignment:
Q  18 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31337294 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggtaaaagtg 31337393  T
Q  118 attattttgagaagaaatttaagttatgttgattcattagaagtataagctgtaatttcatttggcattctgtg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31337394 attattttgagaagaaatttaagttatgttgattcattagaagtataagctgttatttcatttggcattctgtg 31337467  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 2694672 - 2694805
Alignment:
Q  20 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||    
T  2694672 agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat 2694758  T
Q  120 tattttgagaagaaatttaagttatgttgattcattagaagtataag 166  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  2694759 tattttgagaagaaattcaagttatgttgattgattagatgtataag 2694805  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 5559297 - 5559164
Alignment:
Q  20 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||             |||||||||||||||||||||||||||||||| ||||||||    
T  5559297 agctagggtttggcttggcaagaagattgaggcaggggctgaatgt-------------aagtataagtgattaatagcttaaattgaggtaaaagtgat 5559211  T
Q  120 tattttgagaagaaatttaagttatgttgattcattagaagtataag 166  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  5559210 tattttgagaagaaattcaagttatgttgattgattagatgtataag 5559164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 25637223 - 25637273
Alignment:
Q  120 tattttgagaagaaatttaagttatgttgattcattagaagtataagctgt 170  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  25637223 tattttgagaagaaatttaagttatgttgattaattataagcataagctgt 25637273  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34150017 - 34150098
Alignment:
Q  18 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaa-tgtaagtataagtgattaatagc 98  Q
    ||||||||||||||||||||||||||||| ||| || ||| ||| | ||| || |||| |||||||||||||||| ||||||    
T  34150017 agagctagggtttggcttggcaagaagattgagtcaagggatgagtattgaaattgaagtgtaagtataagtgataaatagc 34150098  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 19357899 - 19358032
Alignment:
Q  20 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||    
T  19357899 agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat 19357985  T
Q  120 tattttgagaagaaatttaagttatgttgattcattagaagtataag 166  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  19357986 tattttgagaagaaattcaagttatgttgattgattagatgtataag 19358032  T

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Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 37367646 - 37367779
Alignment:
Q  20 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||    
T  37367646 agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat 37367732  T
Q  120 tattttgagaagaaatttaagttatgttgattcattagaagtataag 166  Q
    |||||||||||| |||| |||||||||||||| |||||| |||||||    
T  37367733 tattttgagaagcaattcaagttatgttgattgattagatgtataag 37367779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 41529926 - 41529793
Alignment:
Q  20 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||             |||||||||||||||||||||||||||||||| ||||||||    
T  41529926 agctagggtttggcttggcaagaagattgaggcaggggctgaatgt-------------aagtataagtgattaatagcttaaattgaggtaaaagtgat 41529840  T
Q  120 tattttgagaagaaatttaagttatgttgattcattagaagtataag 166  Q
    ||||||| ||||||||| |||||||||||||| |||||| |||||||    
T  41529839 tattttgggaagaaattcaagttatgttgattgattagatgtataag 41529793  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31662697 - 31662756
Alignment:
Q  18 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31662697 agagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatg 31662756  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 4342727 - 4342653
Alignment:
Q  96 agcttaaattgaggtgaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgt 170  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  4342727 agctaaaattgaggtaaaagtgcttattttgagaagaaatttaagttatgttgattaattataagcataagctgt 4342653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 34455281 - 34455322
Alignment:
Q  20 agctagggtttggcttggcaagaagatagaggcaggggctga 61  Q
    ||||||||||||||||||||||||||| || ||| |||||||    
T  34455281 agctagggtttggcttggcaagaagattgaagcaagggctga 34455322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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