View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3784_high_2 (Length: 579)
Name: NF3784_high_2
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Original strand, 8457086 - 8457635
Alignment:
| Q |
20 |
aagtgcaataatttattgtctttcctctgttttgcaggttacactcctcagaacctttactctcttaatagtaaatatggttctgagcatcaattaaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457086 |
aagtgcaataatttattgtctttcctctgttttgcaggttacactcctcagaacctttactctcttaatagtaaatatggttctgagcatcaattaaaag |
8457185 |
T |
|
| Q |
120 |
ctttacttcaaaagttgaagcaacagaaagtcagagcaatggctgatatagttatcaatcatcgtgttggtaccacccaaggacatggagggatgtataa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457186 |
ctttacttcaaaagttgaagcaacagaaagtcagagcaatggctgatatagttatcaatcatcgtgttggtaccacccaaggacatggagggatgtataa |
8457285 |
T |
|
| Q |
220 |
tcgttttgatggaattccattaccgtgggatgaacgtgctgtaacatcatctactggtggactggtaacatatatgatacattcaaatatattttcattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8457286 |
tcgttttgatggaattccattaccgtgggatgaacgtgctgtaacatcatctactggtggactggtaacatatatgatacatccaaatatattttcattt |
8457385 |
T |
|
| Q |
320 |
tattcgaatttgaatcccatgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457386 |
tattcgaatttgaatcccatgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatat |
8457485 |
T |
|
| Q |
420 |
cgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457486 |
cgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaa |
8457585 |
T |
|
| Q |
520 |
gggtaagatgtgctacactacacctttagaatattgagggttttcctttg |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457586 |
gggtaagatgtgctacactacacctttagaatattgagggttttcctttg |
8457635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 339 - 537
Target Start/End: Complemental strand, 6827925 - 6827728
Alignment:
| Q |
339 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
438 |
Q |
| |
|
|||||||| || |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
6827925 |
tgttcctcttgctgtatctttgcgttgttcatttctggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
6827826 |
T |
|
| Q |
439 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6827825 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
6827728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 339 - 537
Target Start/End: Complemental strand, 27964568 - 27964371
Alignment:
| Q |
339 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
438 |
Q |
| |
|
|||||||| || | |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
27964568 |
tgttcctcttgctatatctttgcgttgttcatttcaggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
27964469 |
T |
|
| Q |
439 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27964468 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
27964371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 378 - 537
Target Start/End: Original strand, 9822258 - 9822416
Alignment:
| Q |
378 |
taatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9822258 |
taatcgaaacactggggccattttccacgggtttccccatatcgaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgc |
9822357 |
T |
|
| Q |
478 |
cataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
537 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9822358 |
cataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
9822416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University