View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3784_high_3 (Length: 463)
Name: NF3784_high_3
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 52092742 - 52092466
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctgg |
110 |
Q |
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| T |
52092742 |
cacagagaaaggagtgaggcacgtagta-aaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctgg |
52092644 |
T |
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| Q |
111 |
acgatgatggtattttcaaggtcatcattgaga----aagattatggctccctctcannnnnnnncctagtgacgacaagtggaaacctttattgaaacc |
206 |
Q |
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| T |
52092643 |
acgatgatggtattttcaaggtcatcattgagaaattaagattatggctccctctcatttttg----tagtgacgacaagtggaaacctttattg-aacc |
52092549 |
T |
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| Q |
207 |
atggatgccttgttttctagtattctgaaagtgataaaacagttatttgaaatgttatctccatcacaacatttcaatcttca |
289 |
Q |
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| T |
52092548 |
atggatgccttgttttctagtattctgaaagtgataaaacagttatttgaaatgttatcttcatcacaacatttcaatcttca |
52092466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 52082546 - 52082272
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctgg |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | | | ||||| | | ||||||| |||||||||||||||| |
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| T |
52082546 |
cacagagaaaggagtcgggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctgatgttaatttctgg |
52082447 |
T |
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| Q |
111 |
acgatgatggtattttcaaggtcatcattgagaaagattatggctccctctcannnnnnnncctagtgacgacaagtggaaacctttattgaaaccatgg |
210 |
Q |
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| T |
52082446 |
atggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgt-cctagtgacgacaagtggaaacctttattgaa-ccttgg |
52082349 |
T |
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| Q |
211 |
atgccttgttttctagtattctgaaagtgataaaacagttatttgaaatgttatctccatcacaacatttcaatctt |
287 |
Q |
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| T |
52082348 |
atgccttgttttctagtattctgaaagtgataaaactattatttgaaatgttatcttcatcacaacatttcaatctt |
52082272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 318 - 447
Target Start/End: Complemental strand, 52092437 - 52092308
Alignment:
| Q |
318 |
catgacatatattaaagaattgtagtttggttgatgatgannnnnnnctaacatttacaaggccaactccaagaacaatatcacactttctggttttggt |
417 |
Q |
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| T |
52092437 |
catgacatatattaaagaattgtagtttggttgatgatgatttttttctaacatttacaaggccaactccaagaacaatatcacactttctggttttggt |
52092338 |
T |
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| Q |
418 |
gattattattgattgattagaagtaaagga |
447 |
Q |
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| T |
52092337 |
gattattattgattgattagaagtaaagga |
52092308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 52082190 - 52082108
Alignment:
| Q |
365 |
ctaacatttacaaggccaactccaagaacaatatcacactttctggttttggtgattattattgattgattagaagtaaagga |
447 |
Q |
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| T |
52082190 |
ctaacatttacaaggtaatctccaagaacaatatcgcacattctgggtatggtgattattattgattgattagaagtaaagga |
52082108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 1754484 - 1754429
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataa |
66 |
Q |
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| T |
1754484 |
cacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataa |
1754429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 6006292 - 6006235
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaat |
68 |
Q |
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|||| |||| ||||||| ||| || ||||||||||||| || |||||||||||||||| |
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| T |
6006292 |
cacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaat |
6006235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 1528338 - 1528394
Alignment:
| Q |
12 |
acagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaat |
68 |
Q |
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|||||||| ||||| | ||| || |||||||||||||||| | |||||||||||||| |
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| T |
1528338 |
acagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaat |
1528394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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