View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3784_high_8 (Length: 347)

Name: NF3784_high_8
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3784_high_8
NF3784_high_8
[»] chr7 (11 HSPs)
chr7 (42-328)||(35013539-35013825)
chr7 (1-53)||(35013541-35013593)
chr7 (262-328)||(16732133-16732199)
chr7 (262-328)||(17710267-17710333)
chr7 (262-328)||(24251639-24251705)
chr7 (262-328)||(9328523-9328589)
chr7 (262-328)||(16098690-16098756)
chr7 (262-328)||(29200876-29200942)
chr7 (262-328)||(44481287-44481353)
chr7 (275-328)||(24139224-24139277)
chr7 (262-303)||(33224506-33224547)
[»] chr1 (6 HSPs)
chr1 (231-328)||(17371617-17371714)
chr1 (64-180)||(17370077-17370193)
chr1 (262-325)||(44527453-44527516)
chr1 (262-328)||(5609539-5609605)
chr1 (262-328)||(25682851-25682917)
chr1 (255-328)||(14485203-14485276)
[»] chr5 (10 HSPs)
chr5 (262-325)||(4268299-4268362)
chr5 (262-317)||(26076480-26076535)
chr5 (213-328)||(27292585-27292700)
chr5 (262-328)||(20205155-20205221)
chr5 (255-327)||(12717702-12717774)
chr5 (255-327)||(12778926-12778998)
chr5 (262-328)||(15988670-15988736)
chr5 (262-328)||(22767194-22767260)
chr5 (262-328)||(23075032-23075098)
chr5 (262-328)||(25731008-25731074)
[»] chr3 (5 HSPs)
chr3 (262-328)||(53497232-53497298)
chr3 (262-328)||(48227568-48227634)
chr3 (262-301)||(31341673-31341712)
chr3 (221-317)||(27608835-27608931)
chr3 (262-326)||(42340200-42340264)
[»] chr4 (9 HSPs)
chr4 (255-328)||(21321723-21321796)
chr4 (262-328)||(32576969-32577035)
chr4 (262-328)||(49951513-49951579)
chr4 (262-326)||(8754386-8754450)
chr4 (262-328)||(2065053-2065119)
chr4 (262-328)||(28426383-28426449)
chr4 (262-328)||(37245773-37245839)
chr4 (262-312)||(41835248-41835298)
chr4 (262-328)||(49119321-49119387)
[»] chr2 (6 HSPs)
chr2 (255-328)||(88752-88825)
chr2 (262-328)||(9710155-9710221)
chr2 (230-328)||(12130559-12130657)
chr2 (262-328)||(34695825-34695891)
chr2 (262-328)||(34718237-34718303)
chr2 (262-328)||(18344215-18344281)
[»] chr8 (6 HSPs)
chr8 (262-328)||(477977-478043)
chr8 (262-328)||(13415223-13415289)
chr8 (262-328)||(23854132-23854198)
chr8 (262-328)||(3606660-3606726)
chr8 (262-328)||(11870464-11870530)
chr8 (262-328)||(33642685-33642751)
[»] chr6 (3 HSPs)
chr6 (262-328)||(15053096-15053162)
chr6 (262-328)||(11731590-11731656)
chr6 (262-328)||(28107339-28107405)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 42 - 328
Target Start/End: Original strand, 35013539 - 35013825
Alignment:
Q  42 agttcgtgaaggcacaaccaaaatggcagcaatcatatatgacagttctcgaaggtgaggcaatggcactattagaagtcatacagtttgcagaacaaaa 141  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||  |||||||||||||||    
T  35013539 agttcgtgaaggcacaaccaagatggcagcaatcacatatgacagttcttgaaggtgaggcaatggcgctattagaaatcatatggtttgcagaacaaaa 35013638  T
Q  142 cggatgggaaaaagttgttttcgagtctgattcggctacggtggtgaatgccttgtcgtcccatcgtcgcagtgattttgaatttcaggctattatttct 241  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||    
T  35013639 cggatgggaaaaagttgttttcaagtctgattcggctacggtggtgaatgccttgtcgtcccatcgtcgcggtgattctaaattttaggctattatttct 35013738  T
Q  242 tgtattgttgctaagttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35013739 tgtattattgctaagttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 35013825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35013541 - 35013593
Alignment:
Q  1 ttcgtgaaggcacaactaaaatggcagcaatcacatatgacagttcgtgaagg 53  Q
    |||||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  35013541 ttcgtgaaggcacaaccaagatggcagcaatcacatatgacagttcttgaagg 35013593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 16732133 - 16732199
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  16732133 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 16732199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 17710267 - 17710333
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  17710267 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 17710333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 24251639 - 24251705
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  24251639 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 24251705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 9328589 - 9328523
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| |  |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  9328589 tttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 9328523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 16098690 - 16098756
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| |||||| |||||||| ||| ||||||||| || ||||| |||| || |||||||    
T  16098690 tttacattccaacttcaaggtgaagtttgttatgagacaagcgaacatggttgctcatattttagct 16098756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 29200942 - 29200876
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||| | || ||||| |||| ||||||||||    
T  29200942 tttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct 29200876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 44481287 - 44481353
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||| ||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  44481287 tttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 44481353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 24139224 - 24139277
Alignment:
Q  275 ttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||| |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  24139224 ttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 24139277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 33224547 - 33224506
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagc 303  Q
    |||||||||||| |||||| |||||||| |||||||||||||    
T  33224547 tttacattccaacttcaaggtgaagtttgttaggagacaagc 33224506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 17371617 - 17371714
Alignment:
Q  231 ctattatttcttgtattgttgctaagttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    ||||| ||||||||||||||||||  |||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  17371617 ctattgtttcttgtattgttgctagtttagctttacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcataccttagct 17371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 17370077 - 17370193
Alignment:
Q  64 atggcagcaatcatatatgacagttctcgaaggtgaggcaatggcactattagaagtcatacagtttgcagaacaaaacggatgggaaaaagttgttttc 163  Q
    |||||| || ||| ||||||| ||||| ||||| ||||||||||| || |||||||  || | |||||| |||||| | || ||||| || ||  |||||    
T  17370077 atggcaacactcacatatgacggttcttgaaggggaggcaatggctcttttagaagctattcggtttgctgaacaacaaggttgggataaggtcattttc 17370176  T
Q  164 gagtctgattcggctac 180  Q
    |||||||||||||||||    
T  17370177 gagtctgattcggctac 17370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 44527453 - 44527516
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtacttta 325  Q
    |||||||||||| |||||| |||||||||||||||||||||| || ||||  |||| |||||||    
T  44527453 tttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatacttta 44527516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 5609539 - 5609605
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||| ||||||    
T  5609539 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagct 5609605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 25682851 - 25682917
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    ||||||||| || |||||| |||||||| ||||||||||||| |  ||||| |||| ||||||||||    
T  25682851 tttacattctaacttcaaggtgaagtttgttaggagacaagcgagcatggttgctcatactttagct 25682917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 14485203 - 14485276
Alignment:
Q  255 agttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    ||||| ||||||||||||| || ||| ||||||| |||||||||||| | || || || |||| ||||||||||    
T  14485203 agttatttttacattccaactttaaggtgaagttcattaggagacaaacgaacatagttgctcatactttagct 14485276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 4268299 - 4268362
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtacttta 325  Q
    |||||||||||| |||||| |||||||||||||||||||||| || ||||| |||| |||||||    
T  4268299 tttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatacttta 4268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 26076480 - 26076535
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctc 317  Q
    |||||||||||| |||||| |||||||| |||||||||||||||| ||||| ||||    
T  26076480 tttacattccaacttcaaggtgaagtttgttaggagacaagcaaacatggttgctc 26076535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 27292585 - 27292700
Alignment:
Q  213 gtgattttgaatttcaggctattatttcttgtattgttgctaagttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggt 312  Q
    ||||||| |||||| | |||||| ||||| |||||  |  | |||||  |||||||||||| |||||  |||||||||| ||||||||||| || |||||    
T  27292585 gtgatttggaattttatgctattgtttctagtattaattatcagttatctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggt 27292684  T
Q  313 cgctcgtactttagct 328  Q
     |||| ||||||||||    
T  27292685 tgctcatactttagct 27292700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 20205155 - 20205221
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  20205155 tttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 20205221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 12717702 - 12717774
Alignment:
Q  255 agttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagc 327  Q
    ||||||||||||||| |||||| ||| ||||||||||| |  ||||||| |||||||| |||| ||| |||||    
T  12717702 agttagttttacatttcaattttaagatgaagtttattcgacgacaagcgaatatggttgctcataccttagc 12717774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 12778926 - 12778998
Alignment:
Q  255 agttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagc 327  Q
    ||||||||||||||| |||||| ||| ||||||||||| |  ||||||| |||||||| |||| ||| |||||    
T  12778926 agttagttttacatttcaattttaagatgaagtttattcgacgacaagcgaatatggttgctcataccttagc 12778998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 15988736 - 15988670
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||| ||| ||| || |||||||| |||||||||||||| | ||||| |||| ||||||||||    
T  15988736 tttacattacaacttcgaggtgaagtttgttaggagacaagcagacatggttgctcatactttagct 15988670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 22767260 - 22767194
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||| | || ||||| |||| ||||||||||    
T  22767260 tttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct 22767194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 23075032 - 23075098
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| || ||| |||||||| ||||||||||||| || ||||| |||| || |||||||    
T  23075032 tttacattccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagct 23075098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 25731008 - 25731074
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| |||||||| |||| || ||||| |||| ||||||||||    
T  25731008 tttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagct 25731074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 53497232 - 53497298
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| |||||| |||||||||||||||||||||| || ||||  |||| ||||||||||    
T  53497232 tttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttagct 53497298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 48227568 - 48227634
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||| ||| ||||||||||||||||||||||  ||| ||||||||||    
T  48227568 tttacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagct 48227634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 31341712 - 31341673
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaa 301  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  31341712 tttacattccaacttcaaggtgaagtttattaggagacaa 31341673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 27608931 - 27608835
Alignment:
Q  221 gaatttcaggctattatttcttgtattgttgctaagttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctc 317  Q
    |||||| | |||||| ||||| ||||| ||  | |||||  |||||||||||| ||| || |||||||| ||||||||||||| || ||||| ||||    
T  27608931 gaattttatgctattgtttctagtattatttttcagttatctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctc 27608835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 42340264 - 42340200
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttag 326  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| ||||  |||||||    
T  42340264 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcacactttag 42340200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 21321723 - 21321796
Alignment:
Q  255 agttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||| |||||||||||| |||||| |||||||||||| ||||||||| |  ||||| |||| ||||||||||    
T  21321723 agttagctttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttgctcatactttagct 21321796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 32577035 - 32576969
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  32577035 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 32576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 49951513 - 49951579
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  49951513 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 49951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 8754450 - 8754386
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttag 326  Q
    |||||||||||| ||| || |||||||| ||| ||||||||| || ||||| |||||||||||||    
T  8754450 tttacattccaacttcgagatgaagtttgttatgagacaagcgaacatggttgctcgtactttag 8754386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 2065053 - 2065119
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||| ||| |||||| |||||||| ||||||||||| | || ||||| |||| ||||||||||    
T  2065053 tttacatttcaacttcaaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct 2065119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 28426383 - 28426449
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| ||  ||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  28426383 tttacattccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatactttagct 28426449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 37245839 - 37245773
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||| | || ||||| |||| ||||||||||    
T  37245839 tttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagct 37245773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 41835298 - 41835248
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggt 312  Q
    |||||||||||||||| || |||||||| ||||||||||||| || |||||    
T  41835298 tttacattccaatttcgagatgaagtttgttaggagacaagcgaacatggt 41835248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 49119387 - 49119321
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| ||  ||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  49119387 tttacattccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatactttagct 49119321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 88752 - 88825
Alignment:
Q  255 agttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||| |||||||||||| |||||  ||||||||||| |||||||||| || ||||| |||| ||||||||||    
T  88752 agttagctttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatactttagct 88825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 9710155 - 9710221
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  9710155 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 9710221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 12130657 - 12130559
Alignment:
Q  230 gctattatttcttgtattgttgctaagttagttttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||||| ||  | |||||  |||||||||||| ||| || |||||||| ||| ||||||||| || ||||| |||| ||||||||||    
T  12130657 gctattatttctagtattatttatcagttatatttacattccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgctcatactttagct 12130559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 34695891 - 34695825
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  34695891 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 34695825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 34718303 - 34718237
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  34718303 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 34718237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 18344281 - 18344215
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| |||||| |||| ||| |||||||| |||| || ||||| |||| ||||||||||    
T  18344281 tttacattccaacttcaaggtgaaatttgttaggagataagcgaacatggttgctcatactttagct 18344215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 478043 - 477977
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| |||||| |||||||| ||||||||||||| || ||||| |||| ||| ||||||    
T  478043 tttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagct 477977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 13415223 - 13415289
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| |||||| ||||||||  |||||||||||| || ||||| |||| ||||||||||    
T  13415223 tttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagct 13415289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 23854132 - 23854198
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| |||||| |||| ||| ||||||||||||| || ||||| |||| ||||||||||    
T  23854132 tttacattccaacttcaaggtgaactttgttaggagacaagcgaacatggttgctcatactttagct 23854198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 3606726 - 3606660
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    ||||||||| || ||| || |||||||| ||||||||||||| |||||||| | || ||||||||||    
T  3606726 tttacattctaacttcgaggtgaagtttgttaggagacaagcgaatatggttgttcatactttagct 3606660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 11870464 - 11870530
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    ||||||||| || ||| || |||||||| ||||||||||||| || ||||| |||| ||||||||||    
T  11870464 tttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 11870530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 33642751 - 33642685
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||||||  ||||||| ||||||||||||| || ||||| | || ||||||||||    
T  33642751 tttacattccaacttcaaggcgaagtttgttaggagacaagcgaacatggttgttcatactttagct 33642685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 15053162 - 15053096
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||||||| || |||||||| |||| ||||||||||| ||| | |||| ||||||||||    
T  15053162 tttacattccaatttcgaggtgaagtttgttagaagacaagcaaacatgattgctcatactttagct 15053096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 11731656 - 11731590
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || |||||||| ||||||| ||||| || ||||| |||| ||||||||||    
T  11731656 tttacattccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatactttagct 11731590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 28107339 - 28107405
Alignment:
Q  262 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagct 328  Q
    |||||||||||| ||| || || ||||| ||||||||||| |||| ||||| |||| ||||||||||    
T  28107339 tttacattccaacttcgagctgtagtttgttaggagacaaccaaacatggttgctcatactttagct 28107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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