View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3784_low_10 (Length: 302)
Name: NF3784_low_10
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 28751754 - 28751487
Alignment:
| Q |
16 |
atggaaagcaacagaaggaagtactagcactaaatattcattgaaatcagatgcaagaccactttataaacaccttgcagagattcaaaatgaactcaca |
115 |
Q |
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| T |
28751754 |
atggaaagcaacagaaggaagtactagcactaaatattcattgaaatcagatgcaagaccactttataaacaccttgcagagattcaaaatgaactcaca |
28751655 |
T |
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| Q |
116 |
ttatggttggaaaacagcgcgttgctgaaggaagaacttcaacaaagattctcgtcgttgtgtgaaatccaagaagagataacaacagcattgaaagtga |
215 |
Q |
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| T |
28751654 |
ttatggttggaaaacagcgcgttgctgaaggaagaacttcaacaaagattctcgtcgttgtgtgaaatccaagaagagataacaacagcattgaaagtga |
28751555 |
T |
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| Q |
216 |
gtgctgaagacgatgatttcaagtttacaagctataatgctgcaaaattccaaggagaggttttgaat |
283 |
Q |
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| T |
28751554 |
gtgctgaagacgatgatttcaagtttacaagctataatgctgcaaaattccaaggagaggttttgaat |
28751487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 282
Target Start/End: Complemental strand, 13747672 - 13747449
Alignment:
| Q |
59 |
aaatcagatgcaagaccactttataaacaccttgcagagattcaaaatgaactcacattatggttggaaaacagcgcgttgctgaaggaagaacttcaac |
158 |
Q |
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| T |
13747672 |
aaatcagatgcaaggccgatatacaaacacctgacagagattcaatctgaaataacagtctgggtggagaaaagtgccctgatgaaagaagaactgcaac |
13747573 |
T |
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| Q |
159 |
aaagattctcgtcgttgtgtgaaatccaagaagagataacaacagcattgaaagtgagtgctgaagacgatgatttcaagtttacaagctataatgctgc |
258 |
Q |
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| T |
13747572 |
gtagattgtcatctttgtgtctcatccaagaggagataacaaatgcattgaaagccagtgctgaagatgatgactttaggttcacaagctatcaagcagc |
13747473 |
T |
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| Q |
259 |
aaaattccaaggagaggttttgaa |
282 |
Q |
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| T |
13747472 |
caagttccaaggtgaggttttgaa |
13747449 |
T |
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