View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3784_low_16 (Length: 250)
Name: NF3784_low_16
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 16625404 - 16625638
Alignment:
| Q |
16 |
atttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgtggtgaaacctaggataccggccg |
115 |
Q |
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| T |
16625404 |
atttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgcagtgaaacctaggataccggccg |
16625503 |
T |
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| Q |
116 |
cccaaattggtaatgttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccctctggatttaaatc |
215 |
Q |
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| T |
16625504 |
cccaaattggtaatgttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccatctggatttaaatc |
16625603 |
T |
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| Q |
216 |
accctccattactagagcagctttatccaaaaccc |
250 |
Q |
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| T |
16625604 |
accctccattactagagcagctttatccaaaaccc |
16625638 |
T |
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 25275250 - 25275043
Alignment:
| Q |
16 |
atttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgtggtgaaacctaggataccggccg |
115 |
Q |
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||||| ||||| ||||| | ||||| ||||||||||| ||||||| ||||| | |||||||||||||| || || | |||| || || || || || | |
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| T |
25275250 |
atttgaaatttgggtcctaagtgtctgtccattttcaaggcttgtaatacagtgaatgttccttgttgtgctatggatgtgagactaagaatcccagctg |
25275151 |
T |
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| Q |
116 |
cccaaattggtaatgttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccctctggatttaaatc |
215 |
Q |
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|||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| |||| ||||| | ||||| ||| | || |||| |||||| || |
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| T |
25275150 |
cccaaattggaaaagttcttgctaaacatttaacctcttctacttgttgaatgcttgcaagtttccacttgtttactatgctcccatctgaatttaattc |
25275051 |
T |
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| Q |
216 |
accctcca |
223 |
Q |
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|||||||| |
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| T |
25275050 |
accctcca |
25275043 |
T |
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