View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3784_low_6 (Length: 371)

Name: NF3784_low_6
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3784_low_6
NF3784_low_6
[»] scaffold0024 (1 HSPs)
scaffold0024 (16-329)||(61447-61760)
[»] scaffold0460 (2 HSPs)
scaffold0460 (320-371)||(320-371)
scaffold0460 (330-371)||(776-816)
[»] chr2 (26 HSPs)
chr2 (325-371)||(37720199-37720245)
chr2 (329-371)||(5378660-5378702)
chr2 (325-371)||(8851143-8851189)
chr2 (330-371)||(17850978-17851019)
chr2 (328-371)||(8851595-8851638)
chr2 (329-371)||(5379972-5380014)
chr2 (329-371)||(41790925-41790967)
chr2 (326-371)||(19141440-19141485)
chr2 (327-370)||(6171470-6171513)
chr2 (332-371)||(6325360-6325399)
chr2 (328-371)||(20347477-20347520)
chr2 (337-371)||(6324924-6324958)
chr2 (329-371)||(7664247-7664289)
chr2 (333-371)||(26692833-26692871)
chr2 (329-371)||(30190922-30190964)
chr2 (330-371)||(7664686-7664727)
chr2 (330-371)||(16910827-16910868)
chr2 (319-371)||(5793436-5793488)
chr2 (327-371)||(24832328-24832372)
chr2 (328-371)||(11883621-11883664)
chr2 (328-371)||(18296706-18296749)
chr2 (328-371)||(43495307-43495350)
chr2 (329-371)||(2639495-2639537)
chr2 (329-371)||(26841586-26841628)
chr2 (330-371)||(11883939-11883980)
chr2 (331-371)||(16911282-16911321)
[»] chr7 (30 HSPs)
chr7 (327-371)||(37972409-37972453)
chr7 (328-371)||(29292920-29292963)
chr7 (329-371)||(10533033-10533075)
chr7 (329-371)||(37889272-37889314)
chr7 (330-371)||(9035306-9035347)
chr7 (330-371)||(37888833-37888874)
chr7 (327-371)||(3205106-3205150)
chr7 (327-371)||(17156964-17157008)
chr7 (327-371)||(22740153-22740197)
chr7 (328-371)||(20419337-20419380)
chr7 (329-371)||(9034866-9034908)
chr7 (333-371)||(20418891-20418929)
chr7 (330-371)||(29293359-29293400)
chr7 (328-371)||(38826926-38826969)
chr7 (328-371)||(42418589-42418632)
chr7 (329-371)||(9412338-9412380)
chr7 (325-371)||(13863969-13864015)
chr7 (333-371)||(18863970-18864008)
chr7 (329-371)||(37971959-37972001)
chr7 (330-371)||(3687669-3687710)
chr7 (330-371)||(13741557-13741598)
chr7 (327-371)||(16198990-16199034)
chr7 (327-371)||(44600148-44600192)
chr7 (328-371)||(13744246-13744288)
chr7 (330-371)||(3204669-3204708)
chr7 (329-371)||(18864415-18864456)
chr7 (333-371)||(42419042-42419079)
chr7 (330-371)||(13772914-13772955)
chr7 (330-371)||(44599489-44599530)
chr7 (330-371)||(48359320-48359360)
[»] chr4 (31 HSPs)
chr4 (328-371)||(28196786-28196829)
chr4 (329-371)||(292781-292823)
chr4 (329-371)||(9380754-9380796)
chr4 (330-371)||(9380307-9380348)
chr4 (330-371)||(32703663-32703704)
chr4 (331-371)||(25161879-25161919)
chr4 (328-371)||(9023693-9023736)
chr4 (328-371)||(26207759-26207802)
chr4 (328-371)||(32703223-32703266)
chr4 (329-371)||(9023243-9023285)
chr4 (329-371)||(28196345-28196387)
chr4 (329-371)||(39744478-39744520)
chr4 (330-371)||(4239379-4239420)
chr4 (328-371)||(169011-169055)
chr4 (327-371)||(26207358-26207401)
chr4 (328-371)||(293230-293273)
chr4 (329-371)||(39744029-39744071)
chr4 (329-371)||(56505692-56505734)
chr4 (330-371)||(169452-169493)
chr4 (330-371)||(23540265-23540306)
chr4 (330-371)||(39086636-39086677)
chr4 (330-371)||(43292370-43292411)
chr4 (327-367)||(48405959-48405998)
chr4 (329-371)||(23539840-23539880)
chr4 (325-371)||(18077215-18077261)
chr4 (329-371)||(50678778-50678820)
chr4 (327-360)||(39912051-39912084)
chr4 (325-370)||(43051266-43051311)
chr4 (319-355)||(13198935-13198971)
chr4 (319-371)||(24775796-24775848)
chr4 (331-371)||(43292038-43292078)
[»] chr5 (24 HSPs)
chr5 (329-371)||(12498566-12498608)
chr5 (329-371)||(12498941-12498983)
chr5 (329-371)||(26571177-26571219)
chr5 (328-371)||(19514976-19515019)
chr5 (333-371)||(21207229-21207267)
chr5 (328-371)||(2817147-2817190)
chr5 (330-369)||(3888239-3888278)
chr5 (328-371)||(34147523-34147566)
chr5 (329-371)||(16466755-16466797)
chr5 (329-371)||(26570728-26570770)
chr5 (328-370)||(37610200-37610241)
chr5 (328-370)||(37780318-37780359)
chr5 (329-370)||(25115756-25115797)
chr5 (329-370)||(25174848-25174889)
chr5 (330-371)||(37780755-37780796)
chr5 (333-369)||(11316717-11316753)
chr5 (330-371)||(19514525-19514567)
chr5 (329-371)||(43464205-43464246)
chr5 (330-371)||(10098519-10098560)
chr5 (330-371)||(18433015-18433056)
chr5 (330-371)||(18817624-18817665)
chr5 (331-371)||(22729453-22729492)
chr5 (327-371)||(26020447-26020491)
chr5 (333-369)||(30401885-30401921)
[»] chr3 (24 HSPs)
chr3 (329-371)||(48159896-48159938)
chr3 (330-371)||(47666348-47666389)
chr3 (327-371)||(53687885-53687929)
chr3 (328-371)||(53766592-53766635)
chr3 (329-371)||(40848974-40849016)
chr3 (329-371)||(42455789-42455831)
chr3 (330-371)||(48160346-48160387)
chr3 (327-371)||(40848518-40848561)
chr3 (329-371)||(27238464-27238506)
chr3 (333-371)||(27238913-27238951)
chr3 (330-371)||(20969032-20969073)
chr3 (330-371)||(42672978-42673018)
chr3 (331-371)||(22429159-22429199)
chr3 (333-369)||(26007634-26007670)
chr3 (328-371)||(26007180-26007222)
chr3 (329-371)||(36181003-36181045)
chr3 (329-371)||(47665910-47665952)
chr3 (330-371)||(3353128-3353168)
chr3 (330-371)||(8314013-8314054)
chr3 (330-371)||(10348812-10348853)
chr3 (330-371)||(24485473-24485513)
chr3 (330-371)||(42673309-42673349)
chr3 (330-371)||(44007967-44008008)
chr3 (330-371)||(53688316-53688356)
[»] chr1 (47 HSPs)
chr1 (329-371)||(32163056-32163098)
chr1 (330-371)||(9347126-9347167)
chr1 (327-371)||(50615237-50615281)
chr1 (327-371)||(50623065-50623109)
chr1 (328-371)||(4692446-4692489)
chr1 (320-371)||(20480158-20480208)
chr1 (325-371)||(42611180-42611226)
chr1 (333-371)||(46823846-46823884)
chr1 (325-371)||(46824291-46824337)
chr1 (333-371)||(50430094-50430132)
chr1 (330-371)||(6703907-6703948)
chr1 (322-371)||(39692013-39692062)
chr1 (330-371)||(48105129-48105170)
chr1 (331-371)||(13918880-13918920)
chr1 (320-371)||(20371030-20371079)
chr1 (330-370)||(21687025-21687065)
chr1 (319-371)||(27172554-27172606)
chr1 (329-369)||(28633719-28633759)
chr1 (327-371)||(47955303-47955347)
chr1 (328-371)||(8109006-8109049)
chr1 (328-371)||(19007733-19007775)
chr1 (328-371)||(48104676-48104719)
chr1 (320-371)||(49317742-49317792)
chr1 (332-371)||(50526485-50526524)
chr1 (329-371)||(9347564-9347605)
chr1 (329-371)||(19008763-19008805)
chr1 (329-371)||(26815132-26815174)
chr1 (333-371)||(28634170-28634208)
chr1 (329-371)||(44911024-44911066)
chr1 (330-371)||(13918446-13918487)
chr1 (330-371)||(20371366-20371406)
chr1 (330-371)||(20480625-20480665)
chr1 (330-371)||(26814694-26814735)
chr1 (330-371)||(27172116-27172156)
chr1 (330-371)||(49318179-49318219)
chr1 (328-371)||(49284407-49284450)
chr1 (329-371)||(999538-999579)
chr1 (329-371)||(6703459-6703501)
chr1 (333-371)||(42611627-42611665)
chr1 (333-371)||(44911450-44911488)
chr1 (330-371)||(47498301-47498340)
chr1 (329-371)||(50949578-50949620)
chr1 (330-371)||(48190771-48190812)
chr1 (330-371)||(50615634-50615674)
chr1 (330-371)||(50623462-50623502)
chr1 (327-371)||(999109-999152)
chr1 (331-371)||(47498508-47498547)
[»] chr8 (27 HSPs)
chr8 (330-371)||(37397158-37397199)
chr8 (332-371)||(25438794-25438833)
chr8 (328-371)||(41662519-41662562)
chr8 (321-371)||(17431278-17431328)
chr8 (329-371)||(34498568-34498610)
chr8 (329-371)||(37396707-37396749)
chr8 (319-371)||(12281113-12281165)
chr8 (330-370)||(24473343-24473383)
chr8 (328-371)||(24473781-24473824)
chr8 (329-371)||(6199109-6199151)
chr8 (330-371)||(3463958-3463999)
chr8 (330-371)||(41662416-41662457)
chr8 (319-371)||(9823374-9823426)
chr8 (332-371)||(765736-765775)
chr8 (328-371)||(20861651-20861694)
chr8 (332-371)||(33726696-33726735)
chr8 (329-371)||(2856525-2856567)
chr8 (329-371)||(13026634-13026676)
chr8 (329-371)||(13937402-13937444)
chr8 (333-371)||(34498125-34498163)
chr8 (328-370)||(43246190-43246232)
chr8 (330-371)||(9623502-9623543)
chr8 (330-371)||(15156198-15156239)
chr8 (332-369)||(15444213-15444250)
chr8 (330-371)||(16169620-16169661)
chr8 (330-371)||(37752084-37752125)
chr8 (330-371)||(39724061-39724102)
[»] scaffold0029 (1 HSPs)
scaffold0029 (327-371)||(9902-9946)
[»] scaffold0041 (1 HSPs)
scaffold0041 (328-371)||(38708-38751)
[»] chr6 (14 HSPs)
chr6 (328-371)||(7654561-7654604)
chr6 (330-371)||(10087871-10087912)
chr6 (330-371)||(33974312-33974353)
chr6 (333-371)||(32734009-32734047)
chr6 (319-371)||(3404002-3404054)
chr6 (328-371)||(29074385-29074427)
chr6 (328-371)||(29079149-29079191)
chr6 (328-371)||(29106958-29107000)
chr6 (329-371)||(33829649-33829691)
chr6 (330-371)||(3403717-3403758)
chr6 (318-355)||(18241842-18241879)
chr6 (330-371)||(33828990-33829031)
chr6 (330-370)||(22684372-22684411)
chr6 (330-370)||(22754657-22754696)
[»] scaffold0017 (1 HSPs)
scaffold0017 (330-371)||(185287-185328)
[»] scaffold0069 (2 HSPs)
scaffold0069 (320-371)||(50065-50114)
scaffold0069 (330-371)||(50520-50560)
[»] scaffold0001 (2 HSPs)
scaffold0001 (328-371)||(183675-183718)
scaffold0001 (330-371)||(438930-438971)
[»] scaffold0176 (1 HSPs)
scaffold0176 (329-371)||(20056-20098)
[»] scaffold0319 (1 HSPs)
scaffold0319 (326-371)||(6390-6435)
[»] scaffold0192 (1 HSPs)
scaffold0192 (328-371)||(25382-25425)
[»] scaffold0802 (1 HSPs)
scaffold0802 (330-371)||(1433-1474)
[»] scaffold0535 (1 HSPs)
scaffold0535 (328-369)||(10010-10051)


Alignment Details
Target: scaffold0024 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 61760 - 61447
Alignment:
Q  16 tatacctcatattggtaatttgttttgtttgagttagagttcactataattgaagggaaaagagggatacaacaattgaagaaatggaaatttttggttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61760 tatacctcatattggtaatttgttttgtttgagttagagttcactataattgaagggaaaagagggatacaacaattgaagaaatggaaatttttggttt 61661  T
Q  116 atattcctctgctcaattcattggtttagctgtttatttaattttatatcactatttttgtagcgcattttgtgctttagtgagatcaaaatattgttct 215  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  61660 atattcctctactcaattaattggtttagctgtttatttaattttatatcactatttttgtagcgcattttgtgttttagtgagatcaaaatattcttct 61561  T
Q  216 tagtagaagttcatttgagaagattgatagcatcaaatagtagcaagtaggatcgaccaaattttgatctatatgcaaatgtaaccttcattcactttaa 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61560 tagtagaagttcatttgagaagattggtagcatcaaatagtagcaagtaggatcgaccaaattttgatctatatgcaaatgtaaccttcattcactttaa 61461  T
Q  316 ttgaaaaagaataa 329  Q
    || |||||||||||    
T  61460 tttaaaaagaataa 61447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 320 - 371
Alignment:
Q  320 aaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  320 aaaagaataaggcttaattgcacttttcccccctatagtttgtcaattgtgc 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 816 - 776
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  816 ggcttaattgcactttttcccc-tatagtttgccaattgtgc 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 37720199 - 37720245
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37720199 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 37720245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 5378660 - 5378702
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5378660 aggcttaattgcacttttcccccctatagtttgccaattgtgc 5378702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 8851143 - 8851189
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  8851143 aataaggtttaattgcacttttcccccctatagtttgccaattgtgc 8851189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 17850978 - 17851019
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17850978 ggcttaattgcacttttcccccctatagtttgccaattgtgc 17851019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 8851638 - 8851595
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  8851638 aaggcttaattgcacttttcccccctatagtttgtcaattgtgc 8851595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 5380014 - 5379972
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  5380014 aggcttaattgcacttttcccccctatagtttaccaattgtgc 5379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 41790967 - 41790925
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  41790967 aggcttaattgcacttttcccccctatattttgccaattgtgc 41790925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 19141440 - 19141485
Alignment:
Q  326 ataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  19141440 ataagacttaattgcactttttccccctatagtttgccaattgtgc 19141485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 6171513 - 6171470
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  6171513 taaggcttaattgcacttttcccccctatcttttgccaattgtg 6171470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 6325399 - 6325360
Alignment:
Q  332 cttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  6325399 cttaattgcacttttcccccatatagtttgccaattgtgc 6325360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 20347520 - 20347477
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  20347520 aaggcttaattgcacttttcccccctatcttttgccaattgtgc 20347477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 6324924 - 6324958
Alignment:
Q  337 ttgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||    
T  6324924 ttgcacttttcccccctatagtttgccaattgtgc 6324958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 7664247 - 7664289
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  7664247 aggcttaattgcacttttcccccctatagtttatcaattgtgc 7664289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 26692871 - 26692833
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  26692871 ttaattgcacttttcccctctatagtttgccaattgtgc 26692833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 30190922 - 30190964
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  30190922 aggcttaattgcacttttcccccctatcttttgccaattgtgc 30190964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 7664727 - 7664686
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  7664727 ggcttaattgcacttttcctccctatagtttgtcaattgtgc 7664686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 16910827 - 16910868
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  16910827 ggcttaattgcacttttcccccatgtagtttgccaattgtgc 16910868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 5793436 - 5793488
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| || |||| ||||||||||||||||||| | |||||||||||||||||    
T  5793436 aaaaataaaaaggtttaattgcacttttcccccttgtagtttgccaattgtgc 5793488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 24832328 - 24832372
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||    
T  24832328 taaggcttaattgcacttttcccccctatcttttgctaattgtgc 24832372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 11883621 - 11883664
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||    
T  11883621 aaggcttaattgcacttttcccccctatcttttgctaattgtgc 11883664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 18296749 - 18296706
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  18296749 aaggcttaattgcacttttcacccctatcttttgccaattgtgc 18296706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 43495307 - 43495350
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||    
T  43495307 aaggcttaattgcacttttcccacctatattttgctaattgtgc 43495350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 2639537 - 2639495
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||  ||||||||||||||    
T  2639537 aggcttaattgcacttttcacccctatcttttgccaattgtgc 2639495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 26841586 - 26841628
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||  ||||||||||||||    
T  26841586 aggcttaattgcacttttcacccctatcttttgccaattgtgc 26841628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 11883980 - 11883939
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  11883980 ggcttaattgcacttttcccccctatcttttgctaattgtgc 11883939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 16911321 - 16911282
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  16911321 gcttaattgcacttt-cgcccctatagtttgccaattgtgc 16911282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 37972453 - 37972409
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37972453 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 37972409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 29292920 - 29292963
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29292920 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 29292963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 10533033 - 10533075
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10533033 aggcttaattgcacttttcccccctatagtttgccaattgtgc 10533075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 37889314 - 37889272
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37889314 aggcttaattgcacttttcccccctatagtttgccaattgtgc 37889272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 9035347 - 9035306
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9035347 ggcttaattgcacttttcccccctatagtttgccaattgtgc 9035306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 37888833 - 37888874
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37888833 ggcttaattgcacttttcccccctatagtttgccaattgtgc 37888874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 3205150 - 3205106
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  3205150 taaggcttaattgcacttttcccccctatagtttgtcaattgtgc 3205106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 17156964 - 17157008
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  17156964 taaggcttaattgcacttttcccccctatagtttgtcaattgtgc 17157008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 22740153 - 22740197
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  22740153 taaggcttaattgcacttttcccccctatagtttgtcaattgtgc 22740197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 20419380 - 20419337
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  20419380 aaggcttaattgcacttttcccccctatagtttgtcaattgtgc 20419337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 9034866 - 9034908
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9034866 aggcttaattgcacttttcccccctataatttgccaattgtgc 9034908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 20418891 - 20418929
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20418891 ttaattgcacttttcccccctatagtttgccaattgtgc 20418929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 29293400 - 29293359
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29293400 ggcttaattgcatttttcccccctatagtttgccaattgtgc 29293359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 38826969 - 38826926
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||| ||||||||||||||||||| |||||||||    
T  38826969 aaggcttaattgcatttttcccccctatagtttgtcaattgtgc 38826926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 42418589 - 42418632
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  42418589 aaggcttaatttcacttttcccccctatagtttgctaattgtgc 42418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 9412380 - 9412338
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  9412380 aggcttaattgcacttttcccccctatcttttgccaattgtgc 9412338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 13864015 - 13863969
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||    
T  13864015 aataaggcttaattgcacttttcacccctatcttttgccaattgtgc 13863969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 18863970 - 18864008
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  18863970 ttaattgcacttttcccccctatagtttgtcaattgtgc 18864008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 37971959 - 37972001
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  37971959 aggcttaattgcacttttctcccctgtagtttgccaattgtgc 37972001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 3687710 - 3687669
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  3687710 ggcttaattgcacttttcccccctatcttttgccaattgtgc 3687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 13741557 - 13741598
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  13741557 ggcttaattgcatttttcccccctatagtttaccaattgtgc 13741598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 16199034 - 16198990
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| |||  |||||||||||||||||||    
T  16199034 taaggcttaattgcactttttcccattatagtttgccaattgtgc 16198990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 44600192 - 44600148
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||    
T  44600192 taaggcttaattgcacttttcacccctatcttttgccaattgtgc 44600148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 13744288 - 13744246
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  13744288 aaggcttaattgcacttttc-cccctatagtttgtcaattgtgc 13744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 3204669 - 3204708
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  3204669 ggcttaattgcacttt--ccccctatagtttgccaattgtgc 3204708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 18864456 - 18864415
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  18864456 aggcttaattgtacttttccccc-tatagtttgccaattgtgc 18864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 42419079 - 42419042
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  42419079 ttaattgcacttttccccc-tatagtttgccaattgtgc 42419042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 13772955 - 13772914
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  13772955 ggcttaattgcacttttcccccctatcatttgctaattgtgc 13772914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 44599489 - 44599530
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  44599489 ggcttaattgcacttttcacccctatcttttgccaattgtgc 44599530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 48359320 - 48359360
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  48359320 ggcttaattgcactttt-ccccctatagtttgtcaattgtgc 48359360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 28196829 - 28196786
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28196829 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 28196786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 292781 - 292823
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  292781 aggcttaattgcacttttcccccctatagtttgccaattgtgc 292823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 9380796 - 9380754
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9380796 aggcttaattgcacttttcccccctatagtttgccaattgtgc 9380754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 9380307 - 9380348
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9380307 ggcttaattgcacttttcccccctatagtttgccaattgtgc 9380348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 32703704 - 32703663
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32703704 ggcttaattgcacttttcccccctatagtttgccaattgtgc 32703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 25161879 - 25161919
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25161879 gcttaattgcacttttcccccctatagtttgccaattgtgc 25161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 9023736 - 9023693
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  9023736 aaggcttaattgcacttttcccccctatagtttgtcaattgtgc 9023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 26207802 - 26207759
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  26207802 aaggcttaattgcatttttcccccctatagtttgccaattgtgc 26207759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 32703223 - 32703266
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  32703223 aaggcttaattgcacttttcccccctataatttgccaattgtgc 32703266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 9023243 - 9023285
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  9023243 aggcttaattgcacttttctcccctatagtttgccaattgtgc 9023285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 28196345 - 28196387
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  28196345 aggcttaattgcacttttcccccctataatttgccaattgtgc 28196387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 39744520 - 39744478
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  39744520 aggcttaattgcacttttcccccctatagtttgtcaattgtgc 39744478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 4239420 - 4239379
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  4239420 ggcttaattgcactttttccccctatagtttgccaattgtgc 4239379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 169011 - 169055
Alignment:
Q  328 aaggcttaattgcacttttc-ccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  169011 aaggcttaattgcacttttctccccctatagtttgccaattgtgc 169055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 26207358 - 26207401
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  26207358 taaggcttaattgcacttt-cccccctatagtttgccaattgtgc 26207401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 293273 - 293230
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  293273 aaggcttaattgcactttttccccctatagtttgtcaattgtgc 293230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 39744029 - 39744071
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  39744029 aggcttaattgcactttttccccctatagtttaccaattgtgc 39744071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 56505692 - 56505734
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  56505692 aggcttaattgcacttttcccccctatcttttgccaattgtgc 56505734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 169493 - 169452
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  169493 ggcttaattgcatttttcccccctatagtttgtcaattgtgc 169452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 23540306 - 23540265
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  23540306 ggcttaattgcacttttcacccctatagtttgtcaattgtgc 23540265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 39086677 - 39086636
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  39086677 ggcttaattgcacttttctcccatatagtttgccaattgtgc 39086636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 43292411 - 43292370
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  43292411 ggcttaattgcatttttcccccctttagtttgccaattgtgc 43292370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 48405959 - 48405998
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaatt 367  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  48405959 taaggcttaattgcactttt-ccccctatagtttgccaatt 48405998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 23539840 - 23539880
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  23539840 aggcttaattgcacttt--ccccctatagtttgccaattgtgc 23539880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 18077261 - 18077215
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||| |||||||  ||||| ||||||||    
T  18077261 aataaggcttaattgcacttttcacccctattttttgctaattgtgc 18077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 50678778 - 50678820
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||  ||||||||||||||    
T  50678778 aggcttaattgcacttttcacccctatcttttgccaattgtgc 50678820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 39912051 - 39912084
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagttt 360  Q
    |||||||||||||||||||||| |||||||||||    
T  39912051 taaggcttaattgcacttttcctccctatagttt 39912084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 43051311 - 43051266
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||| ||||| |||||||  |||||||||||||    
T  43051311 aataaggcttaattgcatttttcacccctatcttttgccaattgtg 43051266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 13198971 - 13198935
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctat 355  Q
    ||||| || ||||||||||||||||||||||||||||    
T  13198971 aaaaaaaaaaaggcttaattgcacttttcccccctat 13198935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 24775848 - 24775796
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| || |||||||||||||||||||||| |||||  |||| |||||||||    
T  24775848 aaaaaaaaaaaggcttaattgcacttttccctcctatcttttgtcaattgtgc 24775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 43292038 - 43292078
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  43292038 gcttaattgcacttttttcccctatagtttgtcaattgtgc 43292078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 12498566 - 12498608
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12498566 aggcttaattgcacttttcccccctatagtttgccaattgtgc 12498608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 12498983 - 12498941
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12498983 aggcttaattgcacttttcccccctatagtttgccaattgtgc 12498941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 26571219 - 26571177
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26571219 aggcttaattgcacttttcccccctatagtttgccaattgtgc 26571177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 19515019 - 19514976
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  19515019 aaggcttaattgcacttttcccccctatagtttgtcaattgtgc 19514976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 21207229 - 21207267
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21207229 ttaattgcacttttcccccctatagtttgccaattgtgc 21207267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 2817147 - 2817190
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  2817147 aaggtttaattgcacttttcctccctatagtttgccaattgtgc 2817190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 3888239 - 3888278
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgt 369  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  3888239 ggcttaattgcacatttcccccctatagtttgccaattgt 3888278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 34147566 - 34147523
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  34147566 aaggcttaattgcactttttccccctatagtttgtcaattgtgc 34147523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 16466797 - 16466755
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  16466797 aggcttaattgcacttttcccccctatattttgctaattgtgc 16466755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 26570728 - 26570770
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  26570728 aggcttaattacacttttcccccctatagtttgtcaattgtgc 26570770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 37610200 - 37610241
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  37610200 aaggcttaattgcactttt-ccccctatagtttgccaattgtg 37610241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 37780318 - 37780359
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  37780318 aaggcttaattgcactttt-ccccctatagtttgccaattgtg 37780359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 25115756 - 25115797
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  25115756 aggcttaattgcacttttcccccctatcttttgccaattgtg 25115797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 25174848 - 25174889
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  25174848 aggcttaattgcacttttcccccctatcttttgccaattgtg 25174889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 37780796 - 37780755
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  37780796 ggcttaattgtacttttcccccctatagtttgctaattgtgc 37780755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 11316717 - 11316753
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgt 369  Q
    ||||||||||||||||| |||||||||||||||||||    
T  11316717 ttaattgcacttttccctcctatagtttgccaattgt 11316753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 19514525 - 19514567
Alignment:
Q  330 ggcttaattgcacttttcccc-cctatagtttgccaattgtgc 371  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  19514525 ggcttaattgcactttcccccccctatagtttgccaattgtgc 19514567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 43464246 - 43464205
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  43464246 aggcttaattgcacttttc-cccctatagtttgtcaattgtgc 43464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 10098519 - 10098560
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| || ||||||||||| |||||||||    
T  10098519 ggcttaattgcactttttcctcctatagtttgtcaattgtgc 10098560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 18433015 - 18433056
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  18433015 ggcttaattgcacttttcccccctatcttttgctaattgtgc 18433056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 18817665 - 18817624
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  18817665 ggcttaattgcacttttcacccctatcttttgccaattgtgc 18817624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 22729492 - 22729453
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  22729492 gcttaattgcacttttc-cccctataatttgccaattgtgc 22729453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 26020447 - 26020491
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| ||||||  ||||| ||||||||    
T  26020447 taaggcttaattgcacttttcctccctatcttttgctaattgtgc 26020491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 30401885 - 30401921
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgt 369  Q
    |||||||||||||||| | ||||||||||||||||||    
T  30401885 ttaattgcacttttcctctctatagtttgccaattgt 30401921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 48159896 - 48159938
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48159896 aggcttaattgcacttttcccccctatagtttgccaattgtgc 48159938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 47666389 - 47666348
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47666389 ggcttaattgcacttttcccccctatagtttgccaattgtgc 47666348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 53687885 - 53687929
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  53687885 taaggcttaattgcacttttcccccctatagtttgtcaattgtgc 53687929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 53766635 - 53766592
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  53766635 aaggcttaattgcacttttcccccctatagtttgcaaattgtgc 53766592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 40849016 - 40848974
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  40849016 aggcttaattgcacttttcccctctatagtttgccaattgtgc 40848974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 42455789 - 42455831
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  42455789 aggcttaattgcacttttcccccctatagtttgtcaattgtgc 42455831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 48160387 - 48160346
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  48160387 ggcttaattgcactttccccccctatagtttgccaattgtgc 48160346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 40848518 - 40848561
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  40848518 taaggcttaattgcactttt-ccccctatagtttgccaattgtgc 40848561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 27238464 - 27238506
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  27238464 aggcttaattgtacttttccctcctatagtttgccaattgtgc 27238506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 27238951 - 27238913
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  27238951 ttaattgcacttttcccctctatagtttgccaattgtgc 27238913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 20969073 - 20969032
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  20969073 ggcttaattgcacttttcccccctatcttttgccaattgtgc 20969032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 42672978 - 42673018
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  42672978 ggcttaattgcacttttcccc-ctatagtttgccaattgtgc 42673018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 22429159 - 22429199
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  22429159 gcttaattgcacttttctcccctatattttgccaattgtgc 22429199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 26007670 - 26007634
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgt 369  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26007670 ttaattgcactttttccccctatagtttgccaattgt 26007634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 26007180 - 26007222
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||| ||||||||||||||||||| |||||||||    
T  26007180 aaggcttaattgca-ttttcccccctatagtttgtcaattgtgc 26007222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 36181045 - 36181003
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| ||||||||||||  ||||||||    
T  36181045 aggcttaattgcacttttcctccctatagtttgttaattgtgc 36181003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 47665910 - 47665952
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||| ||||||||| |||||||||    
T  47665910 aggcttaattgcactttttccccttatagtttgtcaattgtgc 47665952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 3353128 - 3353168
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  3353128 ggcttaattgcactttt-ccccctatagtttgtcaattgtgc 3353168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 8314013 - 8314054
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||| |||| |||||||||    
T  8314013 ggcttaattgcacttttctcccctatattttgtcaattgtgc 8314054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 10348853 - 10348812
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  10348853 ggcttaattgcactttttcctcatatagtttgccaattgtgc 10348812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 24485513 - 24485473
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  24485513 ggcttaattgcacttttctccc-tatagtttgccaattgtgc 24485473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 42673349 - 42673309
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  42673349 ggcttaattgcacttttc-cccctatagtttgtcaattgtgc 42673309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 44007967 - 44008008
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  44007967 ggcttaattgcacttttcctccctatagtttttcaattgtgc 44008008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 53688356 - 53688316
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  53688356 ggcttaattgcacttt-ctcccctatagtttgccaattgtgc 53688316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 32163098 - 32163056
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32163098 aggcttaattgcacttttcccccctatagtttgccaattgtgc 32163056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 9347126 - 9347167
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9347126 ggcttaattgcacttttcccccctatagtttgccaattgtgc 9347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 50615237 - 50615281
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  50615237 taaggcttaattgcacttttcccccctatagtttgtcaattgtgc 50615281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 50623065 - 50623109
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  50623065 taaggcttaattgcacttttcccccctatagtttgtcaattgtgc 50623109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 4692489 - 4692446
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  4692489 aaggcttaattgcactttttccccctatagtttgccaattgtgc 4692446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 20480158 - 20480208
Alignment:
Q  320 aaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  20480158 aaaagaataaggcttaattgcactttt-ccccctatagtttgtcaattgtgc 20480208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 42611180 - 42611226
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  42611180 aataaggtttaattgcacttttcccccttatagtttgccaattgtgc 42611226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 46823846 - 46823884
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46823846 ttaattgcacttttcccccctatagtttgccaattgtgc 46823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 46824337 - 46824291
Alignment:
Q  325 aataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  46824337 aataaggcttaattgcactttttcctcctatagtttgccaattgtgc 46824291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 50430132 - 50430094
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50430132 ttaattgcacttttcccccctatagtttgccaattgtgc 50430094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 6703948 - 6703907
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  6703948 ggcttaattgcacttttctcccctatagtttgccaattgtgc 6703907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 39692062 - 39692013
Alignment:
Q  322 aagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  39692062 aagaaaaaggcttaattgcacttttcccccctatattttgtcaattgtgc 39692013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 48105170 - 48105129
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  48105170 ggcttaattgcacttttcccccttatagtttgccaattgtgc 48105129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 13918920 - 13918880
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  13918920 gcttaattgcacttttcctccctatagtttgccaattgtgc 13918880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 20371030 - 20371079
Alignment:
Q  320 aaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  20371030 aaaagaataaggcttaattgcacttt--ccccctatagtttgtcaattgtgc 20371079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 21687025 - 21687065
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  21687025 ggcttaattgcacttttcccccctatagtttgtcaattgtg 21687065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 27172606 - 27172554
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| || |||||||||||||||||||||||||| || ||||||||||||||    
T  27172606 aaaaaaaaaaaggcttaattgcacttttcccccctgtactttgccaattgtgc 27172554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 28633719 - 28633759
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgt 369  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  28633719 aggcttaattgcacttttcccccttatagtttgccaattgt 28633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 47955303 - 47955347
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||  ||||||||||||||    
T  47955303 taaggcttaattgcacttttcccccctatcttttgccaattgtgc 47955347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 8109049 - 8109006
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  8109049 aaggcttaattgcacttttcccccctatcttttgccaattgtgc 8109006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 19007733 - 19007775
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  19007733 aaggcttaattgcacttt-cccccctatagtttgccaattgtgc 19007775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 48104676 - 48104719
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  48104676 aaggtttaattgcacttttcccccctatagtttggcaattgtgc 48104719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 49317742 - 49317792
Alignment:
Q  320 aaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||| |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  49317742 aaaaaaatatggcttaattgcactttt-ccccctatagtttgccaattgtgc 49317792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 50526524 - 50526485
Alignment:
Q  332 cttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  50526524 cttaattgcactttttccccctatagtttgccaattgtgc 50526485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 9347605 - 9347564
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  9347605 aggcttaattgcacttt-cccccctatagtttgccaattgtgc 9347564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 19008805 - 19008763
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  19008805 aggcttaattgcacttttcccccctatagtttcgcaattgtgc 19008763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 26815174 - 26815132
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  26815174 aggcttaattgcacttttcccccctatagtttatcaattgtgc 26815132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 28634208 - 28634170
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  28634208 ttaattgcacttttcccccctatagtttgtcaattgtgc 28634170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 44911024 - 44911066
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  44911024 aggcttaattgcactttccccccctatattttgccaattgtgc 44911066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 13918446 - 13918487
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  13918446 ggcttaattgcactttttcctcctatagtttgccaattgtgc 13918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 20371406 - 20371366
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  20371406 ggcttaattgcacttttccccc-tatagtttgccaattgtgc 20371366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 20480665 - 20480625
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  20480665 ggcttaattgcacttttccccc-tatagtttgccaattgtgc 20480625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 26814694 - 26814735
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  26814694 ggcttaattgcacttttcctccctatagtttgtcaattgtgc 26814735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 27172116 - 27172156
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  27172116 ggcttaattgcacttttcccc-ctatagtttgccaattgtgc 27172156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 49318219 - 49318179
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  49318219 ggcttaattgcacttt-cccccctatagtttgccaattgtgc 49318179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 49284407 - 49284450
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  49284407 aaggcttaattgcacttttcacccctatcttttgccaattgtgc 49284450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 999579 - 999538
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  999579 aggcttaattgcacttttc-cccctatagattgccaattgtgc 999538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 6703459 - 6703501
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| || |||||||||| ||||||||||    
T  6703459 aggcttaattgcactttttcctcctatagtttaccaattgtgc 6703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 42611665 - 42611627
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  42611665 ttaattgcacttttctcccctatagtttgtcaattgtgc 42611627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 44911488 - 44911450
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  44911488 ttaattgcattttttccccctatagtttgccaattgtgc 44911450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 47498301 - 47498340
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  47498301 ggcttaattgcacttt--ccccctatagtttgccaattgtgc 47498340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 50949620 - 50949578
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||| |||||||||||| ||||||||||||||| |||||||||    
T  50949620 aggcataattgcactttccccccctatagtttgtcaattgtgc 50949578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 48190771 - 48190812
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  48190771 ggcttaattgcacttttcacccctatcttttgccaattgtgc 48190812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 50615674 - 50615634
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  50615674 ggcttaattgcacttttc-cccctatagtttgtcaattgtgc 50615634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 50623502 - 50623462
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  50623502 ggcttaattgcacttttc-cccctatagtttgtcaattgtgc 50623462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 999109 - 999152
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||    
T  999109 taaggtttaattgcactttt-ccccctatagtttgtcaattgtgc 999152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 47498547 - 47498508
Alignment:
Q  331 gcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  47498547 gcttaattgcacttttc-cccctatagtttgtcaattgtgc 47498508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 37397199 - 37397158
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37397199 ggcttaattgcacttttcccccctatagtttgccaattgtgc 37397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 25438794 - 25438833
Alignment:
Q  332 cttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25438794 cttaattgcacttttcccccctatagtttgccaattgtgc 25438833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 41662519 - 41662562
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  41662519 aaggcttaattgcacttttcccccatatagtttgccaattgtgc 41662562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 17431278 - 17431328
Alignment:
Q  321 aaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  17431278 aaagaaaaaggcttaattgcacttttcccccatatagtttgtcaattgtgc 17431328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 34498610 - 34498568
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  34498610 aggcttaattgcacttttcccccctatagtttgcaaattgtgc 34498568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 37396707 - 37396749
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  37396707 aggcttaattgcacttttcccccctatagtttgccgattgtgc 37396749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 12281113 - 12281165
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| || ||||||||||||||||||||||||||||  ||||||||||||||    
T  12281113 aaaaaaaaaaaggcttaattgcacttttcccccctatcttttgccaattgtgc 12281165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 24473343 - 24473383
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  24473343 ggcttaattgcactttttccccctatagtttgccaattgtg 24473383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 24473824 - 24473781
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  24473824 aaggcttaattgcacttttcatccctatagtttgccaattgtgc 24473781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 6199151 - 6199109
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  6199151 aggcttaattgcacttttcttccctatagtttgccaattgtgc 6199109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 3463999 - 3463958
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  3463999 ggcttaattgcacttttcccccctatattttgctaattgtgc 3463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 41662457 - 41662416
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  41662457 ggcttaattgcacttttcccccctatcttttgccaattgtgc 41662416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 9823426 - 9823374
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||| || |||||||||||||||||||| |||||||  ||||||||||||||    
T  9823426 aaaaaaaacaaggcttaattgcacttttcacccctatcttttgccaattgtgc 9823374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 765736 - 765775
Alignment:
Q  332 cttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  765736 cttaattgcacttttcccccctatcttttgccaattgtgc 765775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 20861694 - 20861651
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||    
T  20861694 aaggcttaattgcattttttccccctatagtctgccaattgtgc 20861651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 33726696 - 33726735
Alignment:
Q  332 cttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  33726696 cttaattgcactttttccccctatagtttaccaattgtgc 33726735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 2856525 - 2856567
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||| | |||||| ||||||||||||||||||||||    
T  2856525 aggcttaattgtaattttcctccctatagtttgccaattgtgc 2856567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 13026634 - 13026676
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||  ||||||||||||||    
T  13026634 aggcttaattgcacttttcacccctatcttttgccaattgtgc 13026676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 13937444 - 13937402
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||  |||| |||||||||    
T  13937444 aggcttaattgcacttttcccccctattttttgtcaattgtgc 13937402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 34498125 - 34498163
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  34498125 ttaattgcactttttccccctatagtttgtcaattgtgc 34498163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 43246232 - 43246190
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||||||||||||||  ||||| |||||||    
T  43246232 aaggcttaattgcacttttcccccctatcttttgctaattgtg 43246190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 9623502 - 9623543
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| | | ||||||||||||||||||||    
T  9623502 ggcttaattgcactttttctcactatagtttgccaattgtgc 9623543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 15156239 - 15156198
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  |||| |||||||||    
T  15156239 ggcttaattgcacttttcccccctatcttttgtcaattgtgc 15156198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 15444213 - 15444250
Alignment:
Q  332 cttaattgcacttttcccccctatagtttgccaattgt 369  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  15444213 cttaattgcatttttcccctctatagtttgccaattgt 15444250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 16169661 - 16169620
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  16169661 ggcttaattgcacttttcctccctatagtttttcaattgtgc 16169620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 37752084 - 37752125
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  37752084 ggcttaattgcacttttcccccctatgttttgctaattgtgc 37752125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 39724102 - 39724061
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  39724102 ggcttaattgcacttttcacccctatcttttgccaattgtgc 39724061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 9902 - 9946
Alignment:
Q  327 taaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  9902 taaggcttaattgcactttttccccctatagtttgccaattgtgc 9946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 38751 - 38708
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  38751 aaggcttaattgcactttttccccctatagtttgccaattgtgc 38708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 7654604 - 7654561
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  7654604 aaggcttaattgcacttttcccccctatagtttgtcaattgtgc 7654561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 10087912 - 10087871
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  10087912 ggcttaattgcacttttcccccctttagtttgccaattgtgc 10087871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 33974353 - 33974312
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  33974353 ggcttaattgcatttttcccccctatagtttgccaattgtgc 33974312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 32734047 - 32734009
Alignment:
Q  333 ttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  32734047 ttaattgcacttttcctccctatagtttgccaattgtgc 32734009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 3404054 - 3404002
Alignment:
Q  319 aaaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||  |||||||||||||||||||||||||||  ||||| ||||||||    
T  3404054 aaaaagaaataggcttaattgcacttttcccccctatcttttgctaattgtgc 3404002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 29074427 - 29074385
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  29074427 aaggcttaattgctcttt-cccccctatagtttgccaattgtgc 29074385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 29079191 - 29079149
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  29079191 aaggcttaattgctcttt-cccccctatagtttgccaattgtgc 29079149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 29107000 - 29106958
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  29107000 aaggcttaattgctcttt-cccccctatagtttgccaattgtgc 29106958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 33829691 - 33829649
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| |||||||  ||||||||||||||    
T  33829691 aggcttaattgcacttttcacccctatcttttgccaattgtgc 33829649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 3403717 - 3403758
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  3403717 ggcttaattgcacttttcccccctatcttttgctaattgtgc 3403758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 18241842 - 18241879
Alignment:
Q  318 gaaaaagaataaggcttaattgcacttttcccccctat 355  Q
    |||||| || ||||||||||||||||||||||||||||    
T  18241842 gaaaaaaaaaaaggcttaattgcacttttcccccctat 18241879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 33828990 - 33829031
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  33828990 ggcttaattgcacttttcacccctatcttttgccaattgtgc 33829031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 22684411 - 22684372
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  22684411 ggcttaattgcactttt-ccccttatagtttgccaattgtg 22684372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 22754657 - 22754696
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtg 370  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  22754657 ggcttaattgcactttt-ccccttatagtttgccaattgtg 22754696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 185328 - 185287
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  185328 ggcttaattgcacttttcctccctatagtttgccaattgtgc 185287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 50065 - 50114
Alignment:
Q  320 aaaagaataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  50065 aaaagaataaggcttaattgcacttt--ccccctatagtttgtcaattgtgc 50114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 50560 - 50520
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  50560 ggcttaattgcacttttccccc-tatagtttgccaattgtgc 50520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 183718 - 183675
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  183718 aaggcttaattgcacttttcccccctatattttgctaattgtgc 183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 438930 - 438971
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  438930 ggcttaattgcacttttcccccctatcttttgctaattgtgc 438971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 20098 - 20056
Alignment:
Q  329 aggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  20098 aggcttaattgcacttttcccccttatagtttgtcaattgtgc 20056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 6390 - 6435
Alignment:
Q  326 ataaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||    
T  6390 ataaggcttaattgcacttttcccccctatcttttgctaattgtgc 6435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 25425 - 25382
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||    
T  25425 aaggcttaattgcacttttcccccctatcttttgctaattgtgc 25382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 1474 - 1433
Alignment:
Q  330 ggcttaattgcacttttcccccctatagtttgccaattgtgc 371  Q
    ||||||||||||||||| ||||||||  ||||||||||||||    
T  1474 ggcttaattgcactttttccccctatcttttgccaattgtgc 1433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 10010 - 10051
Alignment:
Q  328 aaggcttaattgcacttttcccccctatagtttgccaattgt 369  Q
    ||||||||||||||||||| ||||||||  ||||||||||||    
T  10010 aaggcttaattgcacttttgccccctatcttttgccaattgt 10051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University