View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3784_low_8 (Length: 349)
Name: NF3784_low_8
Description: NF3784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3784_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 6856152 - 6856475
Alignment:
| Q |
9 |
agcacagataaaaatggcaagttttgaaaggaaaacgttaagatgatatgacacaaatttcttttaacttaaacgaattcctaggtaagaatttaatttt |
108 |
Q |
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| T |
6856152 |
agcacagataaaaatggcaagttttaaaaggaaaacgctaagatgatacgacacaaatctcttttaacttaaccaaattcctacgttggaatttaatttt |
6856251 |
T |
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| Q |
109 |
ggacatacgtgtttaaataaaagatgacataaatctcttttaatttaaacaaagttttgaatttatgtccttcctatccataaggaaagccaggtgattt |
208 |
Q |
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| T |
6856252 |
gaacatacgtgtttaaataagagatgacataaatctcttctaatttaaacaaagttttgaatt--tgtccttcctatccataaggaaagccaggtgattt |
6856349 |
T |
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| Q |
209 |
cagaacttgttaactcccaatggttgactatctggcgtggcagacttggatgcctttctannnnnnnatcaagaagtatttttgtttttgccacattata |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
6856350 |
cagaacttgttaactcccaatggttgactatctggcgtggcagacttggatgcctttctatttttttatcaggaagtatttttgtttttgccacattata |
6856449 |
T |
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| Q |
309 |
ataaataaatatgaagcgttaattat |
334 |
Q |
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| T |
6856450 |
ataaataaatatgaagcgttaattat |
6856475 |
T |
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