View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3785_high_1 (Length: 437)
Name: NF3785_high_1
Description: NF3785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3785_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 164 - 355
Target Start/End: Original strand, 24850298 - 24850489
Alignment:
| Q |
164 |
tcagattcttgatctgatatgggaaaggagtttttctcccgatgcacgaagcacagctgcttcaggttgagaaaacagcacagctgcagtgtgtgcctgc |
263 |
Q |
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| T |
24850298 |
tcagattcttgatctgatatgggaaaggagtttttctcccaattcacgaagcacagctgcttcaggttgagacaacagcacagctgcagtgtgtgcctgc |
24850397 |
T |
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| Q |
264 |
tccgccgttgtgttatttgccttcacagtcgtcaccttcagagcatattctccattgttcacgtcatcaacactaaccttgagtgcgttgtc |
355 |
Q |
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| T |
24850398 |
tccgccgttgtgttatttgccttcacagtcgtcaccttcagagcatattctccattgttcacgtcatcaacactaaccttgagtgccttgtc |
24850489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24850138 - 24850276
Alignment:
| Q |
1 |
ctaccttgatctgatacaacatagtaactgatctaagtaaatttatttgtcaaaattcaaaaattagtagaaacacagctgattctggagtggtatttta |
100 |
Q |
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| T |
24850138 |
ctaccttgatctgatacaacatagtaactgatctaagtaaatttatttgtcaaaattcaaaaattagtagaaacacagctgattctggagtggtatttta |
24850237 |
T |
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| Q |
101 |
ttcgattggtaacttgactaatatccaacctccaaactt |
139 |
Q |
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| T |
24850238 |
ttcgattggtaacttgactaatgtccaacctccaaactt |
24850276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 24850536 - 24850590
Alignment:
| Q |
354 |
tcacctggataagattaataaaaattaattcgcaagaaagcttatccaagaaagt |
408 |
Q |
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| T |
24850536 |
tcacctggataagattaataaaaattaattcgcaagaaagcttatccaagaaagt |
24850590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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