View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3785_high_5 (Length: 300)
Name: NF3785_high_5
Description: NF3785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3785_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 6452233 - 6452101
Alignment:
| Q |
162 |
cagatcaacttaattcataagtataagttttcagtcaaaaatcggttttttagtgtttgacaaaggtgtaatatcatttcaaaatgaacaatttggtctt |
261 |
Q |
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| T |
6452233 |
cagatcaacttagttcataagtataagttttcggtcaaaaatcggttttttagtgtttgacaaaggtgtaatatcatttcaaaatgaacaatttggtctt |
6452134 |
T |
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| Q |
262 |
tgatggaac-aaagccttaaatatttcttctca |
293 |
Q |
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| T |
6452133 |
tgatggaacaaaagccttaaatatttcttctca |
6452101 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6452396 - 6452301
Alignment:
| Q |
1 |
gcaaagacttcaagaattagtgttttaaagttgcacgcggaggtagttaatttacatgcaaaaatataaagattctagtgaagattcaatgtgatc |
96 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6452396 |
gcaaagacttgaagaattagtgttttaaagttgcatgcggaggtagtcaatttacatgcaaaaatataaagattcgagtgaagattcaatgtgatc |
6452301 |
T |
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