View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3785_low_1 (Length: 572)
Name: NF3785_low_1
Description: NF3785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3785_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 23 - 572
Target Start/End: Complemental strand, 8188402 - 8187853
Alignment:
| Q |
23 |
aggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaa |
122 |
Q |
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| T |
8188402 |
aggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaa |
8188303 |
T |
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| Q |
123 |
catcatcttcatcatcggtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatc |
222 |
Q |
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| T |
8188302 |
catcatcttcatcatcagtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatc |
8188203 |
T |
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| Q |
223 |
ctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttc |
322 |
Q |
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| T |
8188202 |
ctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttc |
8188103 |
T |
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| Q |
323 |
ttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcat |
422 |
Q |
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| T |
8188102 |
ttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcat |
8188003 |
T |
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| Q |
423 |
tatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatc |
522 |
Q |
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| T |
8188002 |
tatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatc |
8187903 |
T |
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| Q |
523 |
cgaaagtgtttcctttagaaacaaaggattaaagtctgcatcttcttctt |
572 |
Q |
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| T |
8187902 |
tgaaagtgtttcctttagaaacaaaggattaaagtctgcatcttcttctt |
8187853 |
T |
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