View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3786_high_2 (Length: 546)
Name: NF3786_high_2
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3786_high_2 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 21566473 - 21566196
Alignment:
| Q |
9 |
acatcatcaatatagaataactaaactgtttaagataagtagttgaatcttctttnnnnnnnncagataagtagttgaatccgacaaaccaagactgtgt |
108 |
Q |
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| T |
21566473 |
acatcatcaatatagaatagctaaactgtttaagataagtagttgaatcttctttaataaaaacagataagtagttgaatccgacaaacccagactgagt |
21566374 |
T |
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| Q |
109 |
attcctccaatttattctaaactttttatcaaaagatatgcgtggcatccaaattcaaggccacctataaggtgttggcctacactctctcgtacctatt |
208 |
Q |
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| T |
21566373 |
attcctccaatttattctaatttttttatcaaaagaaatgcgtggcatccaaattcaaggccacctacaaggtgttggcctacac--tctcgtacctatt |
21566276 |
T |
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| Q |
209 |
ctatcgtcggttcgttaagaaataacgcaaaagacaattcttcgggtacctgtccctcataatacccacaaactttttac |
288 |
Q |
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| T |
21566275 |
ctatcgtcggttcgttaagaaataaagctaaagacaattcttcgggtacctgtccctcataatacccacaaactttttac |
21566196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 21565955 - 21565908
Alignment:
| Q |
478 |
gttgctaagcatggagtaaggacaaacatcatgagaaaacactcacat |
525 |
Q |
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| T |
21565955 |
gttgctaagcatggagtaaggacaaacatcatgaggaaacactgacat |
21565908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 519
Target Start/End: Original strand, 15532 - 15572
Alignment:
| Q |
479 |
ttgctaagcatggagtaaggacaaacatcatgagaaaacac |
519 |
Q |
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| T |
15532 |
ttgctaagcaaggagtaaggacagacatcaggagaaaacac |
15572 |
T |
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