View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3786_high_3 (Length: 522)
Name: NF3786_high_3
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3786_high_3 |
 | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Original strand, 5101429 - 5101923
Alignment:
| Q |
10 |
ataatactacgaattcataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcg |
109 |
Q |
| |
|
|||||||| ||||| |||||||||| ||| | | ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| |||||| | |
|
|
| T |
5101429 |
ataatacttcgaatgcataaaaggagaaagggtaaaaattcacttgaaaggggtttacacactataggagttccaaaaaggatttcctattatgaactag |
5101528 |
T |
|
| Q |
110 |
tccaagcaactaatggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgt |
209 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5101529 |
tgcaagcaactaatggattcagtgagagtaatttacttggaaggggtggctttggatccgtgtatcaaggaatgctttctagtgggaagatgatagcaat |
5101628 |
T |
|
| Q |
210 |
taaagtacttgacttgacaatagaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatc |
309 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
5101629 |
taaagtacttgacttgacaatggcagaagcatcaagaagctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatg |
5101728 |
T |
|
| Q |
310 |
agcagttgttcaaatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggata |
409 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5101729 |
agtagttgttcaaatcctgatttcaaatctctagtgatggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatt |
5101828 |
T |
|
| Q |
410 |
tcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtgacttgaag |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
5101829 |
tcttgcaaaggttgaacataatgatagatgtggcatcagcattggagtatctccatcatggttctttaataccagtggttcattgtgacttgaag |
5101923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Original strand, 5118988 - 5119482
Alignment:
| Q |
10 |
ataatactacgaattcataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcg |
109 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| | ||||||||| || ||||||| || |||||||||||| ||||||||| |||| |||||| | |
|
|
| T |
5118988 |
ataatacttcgaatgcataaaaggaaaaaggttgacagtccacttgagaggagtttatccgctctaggagttccaagaaggatttcctattatgaacttg |
5119087 |
T |
|
| Q |
110 |
tccaagcaactaatggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgt |
209 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
5119088 |
tgcaagcaactaatggattcagtgacagtaatttacttggaagaggtggttttggatccgtgtataatggaatgctttctagtgggaagatgatagcaat |
5119187 |
T |
|
| Q |
210 |
taaagtacttgacttgacaatagaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatc |
309 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
5119188 |
taaagtacttgacttgacaatggcagaagcatcaagaagctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatg |
5119287 |
T |
|
| Q |
310 |
agcagttgttcaaatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggata |
409 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5119288 |
agtagttgttcaaatcctgatttcaaatctctagtgatggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatt |
5119387 |
T |
|
| Q |
410 |
tcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtgacttgaag |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
5119388 |
tcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatcttcatcatggttcttcaataccagtggttcattgtgatttgaag |
5119482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 84 - 504
Target Start/End: Complemental strand, 5080471 - 5080051
Alignment:
| Q |
84 |
aaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatg |
183 |
Q |
| |
|
|||||||||||| |||| |||||| || ||||||||||||||||| ||||||| ||||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
5080471 |
aaaaaggatttcctattctgaacttgtgcaagcaactaatggatttagtgagactaatttactaggaaagggtggctttggatctgtgtatcaaggaatg |
5080372 |
T |
|
| Q |
184 |
ctttctagtgggaagatgatagctgttaaagtacttgacttgacaatagaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttc |
283 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||| | | |||||| || ||| ||||||| |||||||||||||||| ||| |||| |||| |
|
|
| T |
5080371 |
ctttctagtgggaagatggtagcaattaaagtacttgacttgaaattggaagcaacaacaaaaagctttaatgcagaatgcaatgctatgcgcaatcttc |
5080272 |
T |
|
| Q |
284 |
ggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggtt |
383 |
Q |
| |
|
||||||||||||| ||| | || |||| ||||||||||||| | |||||| ||| | || |||||||| |||| ||||||||| | ||||||||||| |
|
|
| T |
5080271 |
ggcatcgaaatcttgttgagatcatcaccagttgttcaaatgttaatttcaggtctttggtaatggagttaatgtcaaatggaagcttggaaaaatggtt |
5080172 |
T |
|
| Q |
384 |
atactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtacca |
483 |
Q |
| |
|
|||| |||||||||||| ||| | | |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5080171 |
atacactgataactattttttaggtttcttgcaaagattgactataatgatagatgtggcatctgcattggagtatcttcatcatggttcttcaatacca |
5080072 |
T |
|
| Q |
484 |
gtagttcattgtgacttgaag |
504 |
Q |
| |
|
|| ||||||||||| |||||| |
|
|
| T |
5080071 |
gtggttcattgtgatttgaag |
5080051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 504
Target Start/End: Complemental strand, 14412841 - 14412362
Alignment:
| Q |
25 |
cataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatg |
124 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| |||||||||| ||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
14412841 |
cataaaaggaaaaaggttgaaagtccacgtgaaaggggtttatccactgtaggagttccaataaggatttcctattatgaactcgtccaagcaactaatg |
14412742 |
T |
|
| Q |
125 |
gattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgactt |
224 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
14412741 |
gattcagcgagactaatttacttggaaggggtggttttggatcagtgtataaaggaatgctttctattgggaagatgatagcagttaaagtacttgactt |
14412642 |
T |
|
| Q |
225 |
gacaatagaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaat |
324 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
14412641 |
aacaatggaagctacttcaagaagctttgatgcagaatgcaatgcaatgcgcaacctccggcatagaaatctcgtccaaattatcagtagttgttcaaat |
14412542 |
T |
|
| Q |
325 |
cctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttga |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
14412541 |
cctgatttcaaatctctagtgatggagtttatgtcaaacggaagtttggaaaaatggttatactctaataacaattttttggatttcttgcaaaggttga |
14412442 |
T |
|
| Q |
425 |
acataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtgacttgaag |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
14412441 |
acataatgatagatgtggcatctgcattggagtatctccatcatggttcttcaataccagtggttcattgtgacttgaag |
14412362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 504
Target Start/End: Original strand, 16885722 - 16886204
Alignment:
| Q |
25 |
cataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgacta---taggagttccaaaaaggatttcttattttgaactcgtccaagcaacta |
121 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| ||||||||| ||| |||| ||||||| ||||||||| |||| |||||| || |||||||||| |
|
|
| T |
16885722 |
cataaaaagaaaaaagttgaaaatccacttgaaatgggtttatcaactgatttaggggttccaagaaggatttcatattatgaacttgtgcaagcaacta |
16885821 |
T |
|
| Q |
122 |
atggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttga |
221 |
Q |
| |
|
||||||| || |||||||| |||||||||| ||| || || || ||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
16885822 |
atggatttagcgagagtaacttacttggaaaggggggcttcggctctgtgtatcagggaatgctttctaccgggaagatggtagcaattaaagtacttga |
16885921 |
T |
|
| Q |
222 |
cttgacaatagaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttca |
321 |
Q |
| |
|
||||| || |||||| |||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||||| ||| | |||| | ||||||||| |
|
|
| T |
16885922 |
cttgaatatggaagcaacatcaagaagttttgacgcagaatgcaatgcaatgcgcattcttcgacatcgaaatcttgttgaggttattacaagttgttca |
16886021 |
T |
|
| Q |
322 |
aatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggt |
421 |
Q |
| |
|
||| |||||||| || | |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
16886022 |
aataaagatttcaagtcattggtgatggagtttatgtcaaatggaagtgttgaaaaatggttatactcggataactattgtttagatttcttgcaaaggt |
16886121 |
T |
|
| Q |
422 |
tgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtgacttgaag |
504 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
16886122 |
tgaatataatgatagatgttgcatctgcattggagtatctccatcatggttcttcaataccagtggttcattgtgatttgaag |
16886204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 42 - 497
Target Start/End: Complemental strand, 25696123 - 25695668
Alignment:
| Q |
42 |
tgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaat |
141 |
Q |
| |
|
||||||| | |||||| ||||||| || ||| | |||| ||||| ||| || || |||| |||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
25696123 |
tgaaaatactcttgaaaggggtttgtcaactttgggagctccaagaagaatatcctattatgaacttgtgcaagcaactaatggattcaatgagagtaat |
25696024 |
T |
|
| Q |
142 |
ttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagca |
240 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||| || | |||| | ||| ||||||| || ||||||||| |||| ||| |||| ||| ||| | |
|
|
| T |
25696023 |
ttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgccgttaaagtaattgatttg-caatcagaggcaaaa |
25695925 |
T |
|
| Q |
241 |
tcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctc |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || | |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
25695924 |
tcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcat |
25695825 |
T |
|
| Q |
341 |
tagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgt |
440 |
Q |
| |
|
| ||||||||||| |||| ||||||||||||||| ||||||||||| || ||||||||||| | | ||||||||||||| || |||||||||||||| |
|
|
| T |
25695824 |
tggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgt |
25695725 |
T |
|
| Q |
441 |
ggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
25695724 |
tgcatctgcattggaatatctccatcatggttcctcaataccagtggttcattgtga |
25695668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 52 - 494
Target Start/End: Complemental strand, 25341733 - 25341291
Alignment:
| Q |
52 |
cttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaa |
151 |
Q |
| |
|
|||||| ||||||| || ||| | |||| ||||| ||| || || |||| |||| | || ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25341733 |
cttgaaaggggtttgtcaactttgggagctccaagaagaatatcctattatgaaattgtgcaagcaactaatggattcaatgagagtaatttccttggaa |
25341634 |
T |
|
| Q |
152 |
ggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagct |
250 |
Q |
| |
|
|||| |||||||| ||||| ||||| || | |||| | ||| ||||||| || ||||||||| |||| ||| |||| ||| ||| ||||| |||| |
|
|
| T |
25341633 |
gggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgattgccgttaaagtaattgatttg-caatcagaggcaaaatcaaagagct |
25341535 |
T |
|
| Q |
251 |
ttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatgga |
350 |
Q |
| |
|
||||||||||||||||||||||| | || || || ||||||||| | ||| | |||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
25341534 |
ttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatatggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatgga |
25341435 |
T |
|
| Q |
351 |
gtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgtggcatctgca |
450 |
Q |
| |
|
||| |||| ||||||||||||||| || |||||||| || ||||| |||| | || ||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
25341434 |
gttcatgtcaaatggaagtgtagacaattggttatattcaaataacaattgaataaatttcttgcaaaggttaaatataatgatagatgttgcatctgca |
25341335 |
T |
|
| Q |
451 |
ttggagtatctccatcatggttcttcagtaccagtagttcattg |
494 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25341334 |
ttggaatatctccatcatggttcttcagtaccagtggttcattg |
25341291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 34 - 494
Target Start/End: Complemental strand, 23258963 - 23258515
Alignment:
| Q |
34 |
aaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtg |
133 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| || |||||||||||| ||| || || |||| |||||| || |||||||| |||||||||| || |
|
|
| T |
23258963 |
aaaaatgttgaaaatattgttgaaaggggtttatcaaccttaggagttccaagaagaatatcatattatgaacttgtgcaagcaacaaatggattcaatg |
23258864 |
T |
|
| Q |
134 |
agagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaataga |
233 |
Q |
| |
|
|||| ||||||||||||| ||| || ||||| |||||||||||||| | |||| || ||| ||||||| || ||||||||| |||| ||| || |
|
|
| T |
23258863 |
agagcaatttacttggaacggggggctttggctctgtgtatcaagggaagcttcctgatggtgagatgattgcagttaaagtatttgatttgcaaa---- |
23258768 |
T |
|
| Q |
234 |
agcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttc |
333 |
Q |
| |
|
||| ||||||||||||||||||||||||||| | || || |||||||||||||| ||| | ||||||||||||||||| |||| ||||||| |
|
|
| T |
23258767 |
--------caaagagctttgatgcagaatgcaatgcaatgagaaatctacggcatcgaaatctggttaagattatcagcagttgttccaatcttgatttc |
23258676 |
T |
|
| Q |
334 |
aaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatga |
433 |
Q |
| |
|
||||| | ||||||||||| |||| |||||||||||| || ||||||||||| || |||||| |||| || || ||||||||||||| || ||||||| |
|
|
| T |
23258675 |
aaatcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttatattcagataaccattgcttaaatttcttgcaaaggttaaatataatga |
23258576 |
T |
|
| Q |
434 |
tagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattg |
494 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
23258575 |
tagatgttgcatctgcattggaatatctccatcatggttcttcaatacccgtggttcattg |
23258515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 52 - 497
Target Start/End: Complemental strand, 25715946 - 25715501
Alignment:
| Q |
52 |
cttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaa |
151 |
Q |
| |
|
|||||| ||||||| || ||| |||||| ||||| ||| || || |||| |||| | || ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25715946 |
cttgaaaggggtttttcaactttaggagctccaagaagaatatcctattatgaaattgtgcaagcaactaatggattcaatgagagtaatttccttggaa |
25715847 |
T |
|
| Q |
152 |
ggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagct |
250 |
Q |
| |
|
|||| |||||||| ||||| |||||||||| |||| | ||| ||||||| || || |||||| |||| ||| |||| ||| ||| ||||| |||| |
|
|
| T |
25715846 |
gggggggatttggctctgtttatcaaggaaagcttcatgatggtgagatgattgcagtaaaagtaattgatttg-caatcagaggcaaaatcaaagagct |
25715748 |
T |
|
| Q |
251 |
ttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatgga |
350 |
Q |
| |
|
||||||||||||||||||| ||| | || || || ||||| ||||| || | |||||||| ||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
25715747 |
ttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagaagttgctcaaatcttgatttcaaatcattggtgatgga |
25715648 |
T |
|
| Q |
351 |
gtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgtggcatctgca |
450 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||| || |||| |||||| | | ||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
25715647 |
gttcatgtcaaatggaagtgtagaaaaatggttatattcaaataaatattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgca |
25715548 |
T |
|
| Q |
451 |
ttggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
25715547 |
ttggaatatctccatcgtggttcttcaataccagtggttcattgtga |
25715501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 26 - 494
Target Start/End: Complemental strand, 25801057 - 25800589
Alignment:
| Q |
26 |
ataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatgg |
125 |
Q |
| |
|
||||||||||||| ||||| | | |||||| ||||||| || ||| |||||| ||||| ||| || || |||| |||||| || |||||||||||||| |
|
|
| T |
25801057 |
ataaaaggaaaaagaatgaaactactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcgtattatgaacttgtgcaagcaactaatgg |
25800958 |
T |
|
| Q |
126 |
attcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttg |
225 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||| ||||| ||||| || | |||| || ||| ||||||| || || |||||| |||| ||| |
|
|
| T |
25800957 |
attcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcctgatggtgagatgattgcagtcaaagtaattgatttg |
25800858 |
T |
|
| Q |
226 |
acaat-agaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaat |
324 |
Q |
| |
|
|||| ||| ||| ||||| ||||||||||||||||||||||| ||| | || || || ||||||||| | || | |||||||||||||| |||||| |
|
|
| T |
25800857 |
-caatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgtcatcgaaatttggtaaagattatcagcagttgctcaaat |
25800759 |
T |
|
| Q |
325 |
cctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttga |
424 |
Q |
| |
|
| |||||||||||| | ||||||||||| |||| ||||||||||||||| ||||||||||| || ||||||||||| | || |||| |||||||| | |
|
|
| T |
25800758 |
cttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaaatttcttacaaaggttaa |
25800659 |
T |
|
| Q |
425 |
acataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattg |
494 |
Q |
| |
|
| |||||||||||||| ||||||||| | || ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
25800658 |
atataatgatagatgttgcatctgcagtagaatatctccatcatggttcttcaataccagtggttcattg |
25800589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 42 - 497
Target Start/End: Complemental strand, 25323419 - 25322964
Alignment:
| Q |
42 |
tgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaat |
141 |
Q |
| |
|
||||||| | |||||| ||||||| || ||| |||||| ||||| ||| || || |||| |||||| | ||||||||||||||||| | |||||||||| |
|
|
| T |
25323419 |
tgaaaatactcttgaaaggggtttgtcaactttaggagctccaagaagaatatcatattatgaacttttgcaagcaactaatggattaaatgagagtaat |
25323320 |
T |
|
| Q |
142 |
ttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagca |
240 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||| |||| |||| | ||| ||||||| || ||||||||| |||| ||| |||| ||| ||| | |
|
|
| T |
25323319 |
ttccttggaagggggggatttggctctgtttatcagggaaagcttcttgatggtgagatgattgcagttaaagtaattgatttg-caatcagaggcaaaa |
25323221 |
T |
|
| Q |
241 |
tcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctc |
340 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| | || || || ||||||||||| || | |||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
25323220 |
tcaaagagctttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcat |
25323121 |
T |
|
| Q |
341 |
tagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgt |
440 |
Q |
| |
|
| ||||||||||| |||| |||||||||||| || ||||||||||| || ||||||||||| | || |||| |||||||| || |||||||||||||| |
|
|
| T |
25323120 |
tggtgatggagttcatgtcaaatggaagtgttgacaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgt |
25323021 |
T |
|
| Q |
441 |
ggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||| || ||||||||||| |
|
|
| T |
25323020 |
tgcatctgcattggaatatcttcatcatggttcttcaatacctgtggttcattgtga |
25322964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 52 - 491
Target Start/End: Complemental strand, 25647765 - 25647326
Alignment:
| Q |
52 |
cttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaa |
151 |
Q |
| |
|
|||||| ||||||| || ||| |||||| ||||| ||| || || |||| |||||| || ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25647765 |
cttgaaaggggtttgtcaactttaggagctccaagaagaatatcctattatgaacttgtgcaagcaactaatggattcaatgagagtaatttccttggaa |
25647666 |
T |
|
| Q |
152 |
ggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagct |
250 |
Q |
| |
|
|||| | |||||||||||| ||||| || | |||| | ||| ||||||| || ||||||||| |||| || ||||| ||| ||| ||||| |||| |
|
|
| T |
25647665 |
ggggagcatttggatctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgattt-acaatcagaggcaaaatcaaagagct |
25647567 |
T |
|
| Q |
251 |
ttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatgga |
350 |
Q |
| |
|
||||||||||||| ||||||||| | || || || ||||||||||| || | |||||||| ||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
25647566 |
ttgatgcagaatgtaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagaagttgatcaaatcttgatttcaaatcattggtgatgga |
25647467 |
T |
|
| Q |
351 |
gtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgtggcatctgca |
450 |
Q |
| |
|
||| |||| ||||||||||||||| ||||||||||| || ||||||||||| | || ||||||||||||| || |||||||||||||| ||||| | | |
|
|
| T |
25647466 |
gttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaaatttcttgcaaaggttaaatataatgatagatgttgcatcagaa |
25647367 |
T |
|
| Q |
451 |
ttggagtatctccatcatggttcttcagtaccagtagttca |
491 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
25647366 |
ttggaatatctccatcatggttcatcaataccagtggttca |
25647326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 42 - 494
Target Start/End: Complemental strand, 25605400 - 25604948
Alignment:
| Q |
42 |
tgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaat |
141 |
Q |
| |
|
||||||| | |||| | ||||||| || ||| | |||| ||||| ||| || || |||| |||||| || |||||||| |||||||||| |||||||||| |
|
|
| T |
25605400 |
tgaaaatactcttggaaggggtttgtcaactttgggagctccaagaagaatatcatattatgaacttgtgcaagcaacaaatggattcaatgagagtaat |
25605301 |
T |
|
| Q |
142 |
ttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagca |
240 |
Q |
| |
|
|| ||||||||||| | |||||||||||| ||||| || | |||| | ||| | ||||| || ||||||||| |||| ||| |||| ||| ||| | |
|
|
| T |
25605300 |
ttccttggaaggggagcatttggatctgtttatcagggcaagcttcttgatggtgaaatgattgccgttaaagtaattgatttg-caatcagaggcaaaa |
25605202 |
T |
|
| Q |
241 |
tcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctc |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| | || || || ||||| ||||| || | |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
25605201 |
tcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcat |
25605102 |
T |
|
| Q |
341 |
tagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgt |
440 |
Q |
| |
|
| ||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||| | || |||| |||||||| || |||||||||||||| |
|
|
| T |
25605101 |
tggtgatggagttcatgtcaaatggaagtgtagaaaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgt |
25605002 |
T |
|
| Q |
441 |
ggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattg |
494 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||| || |||||||| |
|
|
| T |
25605001 |
tgcatctgcattggaatatcttcatcatggttcttcaatacctgtggttcattg |
25604948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 112 - 497
Target Start/End: Original strand, 24912451 - 24912836
Alignment:
| Q |
112 |
caagcaactaatggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgtta |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| ||||| || | |||| | ||| ||||||| || |||| |
|
|
| T |
24912451 |
caagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgcagtta |
24912550 |
T |
|
| Q |
212 |
aagtacttgacttgacaat-agaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatca |
310 |
Q |
| |
|
||||| |||| ||| |||| ||| ||| ||||| |||||||||| |||||||||||| ||| | || || || ||||||||||| || | ||||||| |
|
|
| T |
24912551 |
aagtaattgatttg-caatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagattatca |
24912649 |
T |
|
| Q |
311 |
gcagttgttcaaatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatat |
410 |
Q |
| |
|
||||||| ||||||| |||||||||||| | ||||||||||| |||| ||||||||||||||| ||||||||||| || ||||||||||| | | | |
|
|
| T |
24912650 |
gcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagttt |
24912749 |
T |
|
| Q |
411 |
cttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||||||| ||||| |||| |||||||||| | || || ||||||||||| |
|
|
| T |
24912750 |
cttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcttggttcttcaatgcctgtggttcattgtga |
24912836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 112 - 497
Target Start/End: Complemental strand, 25453675 - 25453290
Alignment:
| Q |
112 |
caagcaactaatggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgtta |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| ||||| || | |||| | ||| ||||||| || |||| |
|
|
| T |
25453675 |
caagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagtta |
25453576 |
T |
|
| Q |
212 |
aagtacttgacttgacaat-agaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatca |
310 |
Q |
| |
|
||||| |||| ||| |||| ||| ||| ||||| |||||||||| |||||||||||||||| | || || || ||||||||||| || | ||||||| |
|
|
| T |
25453575 |
aagtaattgatttg-caatcagaggcaaaatcaaagagctttgatgaagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatca |
25453477 |
T |
|
| Q |
311 |
gcagttgttcaaatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatat |
410 |
Q |
| |
|
||||||| ||||||| |||||||||||| | || ||||| || |||| ||||||||||||||| ||||||||||| || ||||||||||| | | | |
|
|
| T |
25453476 |
gcagttgctcaaatcttgatttcaaatcattggtaatggaattcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctcagttt |
25453377 |
T |
|
| Q |
411 |
cttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||||||| | || || ||||||||||| |
|
|
| T |
25453376 |
cttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtga |
25453290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 76 - 494
Target Start/End: Complemental strand, 25686379 - 25685958
Alignment:
| Q |
76 |
ggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaaggggtggatttggatctgtgtatc |
175 |
Q |
| |
|
|||| ||||| ||| || || |||| |||||| || ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
25686379 |
ggagctccaagaagaatatcctattatgaacttgttcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatc |
25686280 |
T |
|
| Q |
176 |
aaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagctttgatgcagaatgcaatgcaatgt |
274 |
Q |
| |
|
| || | |||| | ||| ||||||| || ||||||||| |||| ||| |||| ||| ||| ||||| ||||||||||||||||||||||| ||| |
|
|
| T |
25686279 |
atgggaagcttcttgatggtgagatgattgcagttaaagtaattgatttg-caatcagaggcaaaatcaatgagctttgatgcagaatgcaatgcgatga |
25686181 |
T |
|
| Q |
275 |
gcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtaga |
374 |
Q |
| |
|
| || || || ||||||||||| || | |||||| | ||||| ||||||| |||||| ||||| | ||||||||||| |||| ||||||||||||||| |
|
|
| T |
25686180 |
gaaatctacgacatcgaaatctagtaaagattatcggtagttgctcaaatcttgattttaaatcattggtgatggagttcatgtcaaatggaagtgtaga |
25686081 |
T |
|
| Q |
375 |
aaaatggttatactc---tgataactattgtttggatatcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggt |
471 |
Q |
| |
|
||||||||||| || | ||||||||||| | || |||| |||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
25686080 |
caaatggttatattcaaataataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggt |
25685981 |
T |
|
| Q |
472 |
tcttcagtaccagtagttcattg |
494 |
Q |
| |
|
|||||| |||| || |||||||| |
|
|
| T |
25685980 |
tcttcaatacctgtggttcattg |
25685958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 26 - 497
Target Start/End: Original strand, 22900091 - 22900562
Alignment:
| Q |
26 |
ataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatgg |
125 |
Q |
| |
|
|||||||||||| ||||||||| | |||||| | |||||| ||| | |||| ||||| ||| |||||||||| ||| || || |||||||| ||||| |
|
|
| T |
22900091 |
ataaaaggaaaatggttgaaaatactcttgaaagaaatttatcaactcttggagctccaagaagaatttcttattatgagcttgtgcaagcaacaaatgg |
22900190 |
T |
|
| Q |
126 |
attcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttg |
225 |
Q |
| |
|
||| | |||||||||||| ||||||||||| |||||||| ||||||||| | || | |||||| | ||| |||| | || |||||||| |||| ||| |
|
|
| T |
22900191 |
atttaatgagagtaatttgcttggaaggggaggatttgggtctgtgtatgaggggaagctttcaaatggtgagatatttgcggttaaagtgattgatttg |
22900290 |
T |
|
| Q |
226 |
acaatagaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatc |
325 |
Q |
| |
|
| || | | || | | ||||||||| ||||||||||||| || | || || |||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
22900291 |
aactcggaggaaaaattacggagctttgatcgagaatgcaatgcattgagaaatctacggcatcgaaatctggttaagattatcagcagttgttcaaata |
22900390 |
T |
|
| Q |
326 |
ctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaa |
425 |
Q |
| |
|
|||||||||| | | ||||||||||| |||| |||||||||||| || ||||||||||| || |||| | |||||| || ||||||||||||| || |
|
|
| T |
22900391 |
ttgatttcaaagcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttatattcaaataattgttgtttaaatttcttgcaaaggttaaa |
22900490 |
T |
|
| Q |
426 |
cataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| || || |||||||| |
|
|
| T |
22900491 |
tataatgatagatgttgcatatgcattggaatatctccatcatggttcttcaatacctgtggtccattgtga |
22900562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 26 - 494
Target Start/End: Complemental strand, 25476440 - 25475972
Alignment:
| Q |
26 |
ataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatgg |
125 |
Q |
| |
|
||||||||||||| || ||||| | |||||| |||||||||| ||| |||||| || || ||| ||||| |||| |||||| || |||||||||||||| |
|
|
| T |
25476440 |
ataaaaggaaaaagattcaaaatactcttgaaaggggtttatcaactttaggagctctaagaagaatttcctattatgaacttgtgcaagcaactaatgg |
25476341 |
T |
|
| Q |
126 |
attcagtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttg |
225 |
Q |
| |
|
||||| |||| |||||||||||||| |||| || ||||| ||||| |||| || | || | || ||||||| || ||||||||| |||| ||| |
|
|
| T |
25476340 |
attcaatgagtgtaatttacttggacgggggggctttggctctgtatatcgggggaatctccgcaatgatgagatgattgcggttaaagtaattgatttg |
25476241 |
T |
|
| Q |
226 |
acaat-agaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaat |
324 |
Q |
| |
|
|| | ||| ||| | ||| |||||||||| |||||||||||||| | | || || || ||||||||||| ||| | ||||| | |||||||||||| |
|
|
| T |
25476240 |
-cagtcagaggcaaaagcaaagagctttgatgtagaatgcaatgcaacgagaaatctacgacatcgaaatcttgttaagattatttgtagttgttcaaat |
25476142 |
T |
|
| Q |
325 |
cctgatttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttga |
424 |
Q |
| |
|
| ||||||||||| | ||||||||||| |||| |||||||||||| || ||||||||||| | |||| | ||||||| | ||||||||||||||| |
|
|
| T |
25476141 |
ctcgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttatatttaaataattgttgtttgagtttcttgcaaaggttga |
25476042 |
T |
|
| Q |
425 |
acataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattg |
494 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
25476041 |
atataatgatagatgttgcatctgcattggaatatctccatcatggttcttcaatacctgtggttcattg |
25475972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 52 - 477
Target Start/End: Complemental strand, 25570639 - 25570214
Alignment:
| Q |
52 |
cttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaa |
151 |
Q |
| |
|
|||||| |||||||||| || |||||| || || ||| || || |||| |||||| | ||||||| |||||||||| |||||| || |||||||||| |
|
|
| T |
25570639 |
cttgaaaggggtttatcagctttaggagctctaagaagaatatcatattatgaacttttgaaagcaacaaatggattcaatgagagaaaattacttggaa |
25570540 |
T |
|
| Q |
152 |
ggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagct |
250 |
Q |
| |
|
|||| | ||||| |||||||||||||| |||| || ||| |||| || || || |||||| |||| || ||||| ||| ||| ||||| |||| |
|
|
| T |
25570539 |
gggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaaagtatttgattt-acaatcagaggcaaaatcaaagagct |
25570441 |
T |
|
| Q |
251 |
ttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatgga |
350 |
Q |
| |
|
||||||||||||||||||||||| | || || || ||||||||||| || | |||||||| ||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
25570440 |
ttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatgga |
25570341 |
T |
|
| Q |
351 |
gtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgtggcatctgca |
450 |
Q |
| |
|
||| |||| ||||||||||||||| ||||||||||| || ||||||||||| | | ||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
25570340 |
gttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgca |
25570241 |
T |
|
| Q |
451 |
ttggagtatctccatcatggttcttca |
477 |
Q |
| |
|
||| | ||||| ||||||||||||||| |
|
|
| T |
25570240 |
ttgaaatatcttcatcatggttcttca |
25570214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 52 - 358
Target Start/End: Complemental strand, 25311752 - 25311446
Alignment:
| Q |
52 |
cttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaa |
151 |
Q |
| |
|
|||||| ||||||| || ||| | |||| ||||| ||| || || |||| |||| | || ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25311752 |
cttgaaaggggtttgtcaactttgggagctccaagaagaatatcctattatgaaattgtgcaagcaactaatggattcaatgagagtaatttccttggaa |
25311653 |
T |
|
| Q |
152 |
ggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagct |
250 |
Q |
| |
|
|||| |||||||| ||||| ||||| || | |||| | ||| ||||||| || ||||||||| |||| ||| |||| ||| ||| ||||| |||| |
|
|
| T |
25311652 |
gggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgattgccgttaaagtaattgatttg-caatcagaggcaaaatcaaagagct |
25311554 |
T |
|
| Q |
251 |
ttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatgga |
350 |
Q |
| |
|
||||||||||||||||||||||| | || || || ||||||||||| ||| | |||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
25311553 |
ttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatgga |
25311454 |
T |
|
| Q |
351 |
gtttatgt |
358 |
Q |
| |
|
||| |||| |
|
|
| T |
25311453 |
gttcatgt |
25311446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 52 - 439
Target Start/End: Original strand, 24874764 - 24875151
Alignment:
| Q |
52 |
cttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaatttacttggaa |
151 |
Q |
| |
|
|||||| |||||||||| || |||||| || || ||| || || |||| |||||| | ||||||| |||||||||| |||||| || |||||||||| |
|
|
| T |
24874764 |
cttgaaaggggtttatcagctttaggagctctaagaagaatatcatattatgaacttttgtaagcaacaaatggattcaatgagagaaaattacttggaa |
24874863 |
T |
|
| Q |
152 |
ggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagcatcaagaagct |
250 |
Q |
| |
|
|||| | ||||| |||||||||||||| |||| || ||| |||| || || || |||||| |||| || ||||| ||| ||| ||||| |||| |
|
|
| T |
24874864 |
gggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaaagtatttgattt-acaatcagaggcaaaatcaaagagct |
24874962 |
T |
|
| Q |
251 |
ttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctctagtgatgga |
350 |
Q |
| |
|
||||||||||||||||||||||| | || || || ||||||||||| || | |||||||| ||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
24874963 |
ttgatgcagaatgcaatgcaatgagaaatctacgtcatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatgga |
24875062 |
T |
|
| Q |
351 |
gtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatg |
439 |
Q |
| |
|
||| |||| ||||||||||||||| | |||||||| || ||||||||||| | | ||||||||||||| || ||||||||||||| |
|
|
| T |
24875063 |
gttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatg |
24875151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 410 - 497
Target Start/End: Complemental strand, 25490592 - 25490505
Alignment:
| Q |
410 |
tcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||||||| | || || ||||||||||| |
|
|
| T |
25490592 |
tcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtga |
25490505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 42 - 497
Target Start/End: Original strand, 16341 - 16796
Alignment:
| Q |
42 |
tgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtgagagtaat |
141 |
Q |
| |
|
||||||| | |||||| ||||||| || ||| |||||| ||||| ||| || || |||| |||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
16341 |
tgaaaatactcttgaaaggggtttgtcaactctaggagctccaagaagaatatcctattatgaacttgtgcaagcaactaatggattcaatgagagtaat |
16440 |
T |
|
| Q |
142 |
ttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat-agaagcagca |
240 |
Q |
| |
|
|| |||||||| || |||||||| ||||| ||||| || | |||| | ||| ||||||| || ||||||||| |||| ||| |||| ||| ||| | |
|
|
| T |
16441 |
ttccttggaagtgggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgccgttaaagtaattgatttg-caatcagaggcaaaa |
16539 |
T |
|
| Q |
241 |
tcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgatttcaaatctc |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| | || || || ||||||||| | || | |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
16540 |
tcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatttggtaaagattatcagcagttgctcaaatcttgatttcaaatcat |
16639 |
T |
|
| Q |
341 |
tagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatgatagatgt |
440 |
Q |
| |
|
| ||||||||||| |||| ||||||||||||||| | |||||||| || ||||||||||| | | ||||||||||||| || ||||||||||| || |
|
|
| T |
16640 |
tggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagaagt |
16739 |
T |
|
| Q |
441 |
ggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| | || || ||||||||||| |
|
|
| T |
16740 |
tgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtga |
16796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 49843 - 49972
Alignment:
| Q |
26 |
ataaaaggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatgg |
125 |
Q |
| |
|
|||||||| |||| || ||||| | |||||| |||||||||| ||| |||||| || || ||| ||||| |||| |||||| || |||||||||||||| |
|
|
| T |
49843 |
ataaaaggtaaaagattcaaaatactcttgaaaggggtttatcaactttaggagctctaagaagaatttcctattatgaacttgtgcaagcaactaatgg |
49942 |
T |
|
| Q |
126 |
attcagtgagagtaatttacttggaagggg |
155 |
Q |
| |
|
||| |||||| |||||||||||||| |||| |
|
|
| T |
49943 |
atttagtgagtgtaatttacttggacgggg |
49972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 34 - 494
Target Start/End: Original strand, 3819 - 4279
Alignment:
| Q |
34 |
aaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattcagtg |
133 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||| | |||||| ||||| ||| || || |||| |||||| || ||||||| ||||||||| | |
|
|
| T |
3819 |
aaaaatgttgaaaatacttttgaaaggggtttatcagcattaggagctccaagaagaatatcatattatgaacttgtggaagcaacaaatggattcgaag |
3918 |
T |
|
| Q |
134 |
agagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaata-g |
232 |
Q |
| |
|
|||| || |||||||||||||| | ||||| ||||||||| | || | |||| ||| ||| ||||||| || ||||||||| |||| ||| |||| | |
|
|
| T |
3919 |
agagcaaattacttggaagggggagctttggttctgtgtatgaggggaagcttcctaatggtgagatgattgcagttaaagtaattgatttg-caatctg |
4017 |
T |
|
| Q |
233 |
aagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgattt |
332 |
Q |
| |
|
| ||| ||||| || ||||||| |||||||||||||||| | || || || ||||||||||| ||| | |||||||||||||||||||||| |||||| |
|
|
| T |
4018 |
aggcaaaatcaaagagttttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgattt |
4117 |
T |
|
| Q |
333 |
caaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataatg |
432 |
Q |
| |
|
|||||| | ||||||||||| |||| ||||||||||||||| ||||||||||| || |||| || ||| | || ||||||||||||| || |||||| |
|
|
| T |
4118 |
caaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataaataatgtataaatttcttgcaaaggttaaatataatg |
4217 |
T |
|
| Q |
433 |
atagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattg |
494 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| ||||||||||||||| |||| || |||||||| |
|
|
| T |
4218 |
atagatgttgcatcagcattggaatatctacatcatggttcttcaatacctgtggttcattg |
4279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 31 - 497
Target Start/End: Complemental strand, 10324621 - 10324161
Alignment:
| Q |
31 |
aggaaaaatgttgaaaatccacttgaagggggtttatcgactataggagttccaaaaaggatttcttattttgaactcgtccaagcaactaatggattca |
130 |
Q |
| |
|
|||||||| ||||||||| | |||||| ||| ||||| | |||||| | ||| ||| || || |||| |||||| || ||||||| ||||| |||| |
|
|
| T |
10324621 |
aggaaaaacgttgaaaatactcttgaaagggaattatcagttttaggagctacaagaagaatatcatattatgaacttgtggaagcaacaaatggtttca |
10324522 |
T |
|
| Q |
131 |
gtgagagtaatttacttggaaggggtggatttggatctgtgtatcaaggaatgctttctagtgggaagatgatagctgttaaagtacttgacttgacaat |
230 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| ||||||||||| || |||||| || || ||||||| || || |||||| |||| | |
|
|
| T |
10324521 |
atgagagtaaattacttggaagggggagctttggctctgtgtatcaggggatgcttcctgacggtgagatgattgcagtcaaagtaattgattc------ |
10324428 |
T |
|
| Q |
231 |
agaagcagcatcaagaagctttgatgcagaatgcaatgcaatgtgcaaccttcggcatcgaaatctcgttcaaattatcagcagttgttcaaatcctgat |
330 |
Q |
| |
|
||| ||| ||||| ||||||||||||||||||||||| |||| | || || || ||||||||||| ||| | |||||||| ||||||||||||| |||| |
|
|
| T |
10324427 |
agaggcaaaatcaacaagctttgatgcagaatgcaatgtaatgagaaatctacgacatcgaaatctggttaagattatcagtagttgttcaaatcatgat |
10324328 |
T |
|
| Q |
331 |
ttcaaatctctagtgatggagtttatgttaaatggaagtgtagaaaaatggttatactctgataactattgtttggatatcttgcaaaggttgaacataa |
430 |
Q |
| |
|
|||||| | | ||| ||||||| |||| |||||||||||| || | |||||||| || ||||||||||| || || ||||||| ||||| || |||| |
|
|
| T |
10324327 |
ttcaaagcattggtgctggagttcatgtcaaatggaagtgtggacgattggttatattcagataactattgcttaaatttcttgcataggttaaatataa |
10324228 |
T |
|
| Q |
431 |
tgatagatgtggcatctgcattggagtatctccatcatggttcttcagtaccagtagttcattgtga |
497 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
10324227 |
tgatagatgttgcatctgcattggaatatctccatcatggttcttcaatacccgtggttcattgtga |
10324161 |
T |
|
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