View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3786_high_5 (Length: 474)

Name: NF3786_high_5
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3786_high_5
NF3786_high_5
[»] chr7 (3 HSPs)
chr7 (314-462)||(27658121-27658269)
chr7 (1-152)||(33602383-33602528)
chr7 (177-236)||(27656844-27656903)
[»] chr5 (5 HSPs)
chr5 (314-462)||(37605795-37605941)
chr5 (326-453)||(33360981-33361104)
chr5 (326-453)||(5742432-5742556)
chr5 (173-236)||(37606029-37606092)
chr5 (174-216)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (326-453)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (326-453)||(18085257-18085380)
chr6 (173-236)||(31559483-31559546)
[»] chr4 (1 HSPs)
chr4 (174-211)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 314 - 462
Target Start/End: Original strand, 27658121 - 27658269
Alignment:
Q  314 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 413  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T
Q  414 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc 462  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27658221 ttgtacagtgccaccctctcatgctattttcggtcactccgcctgtctc 27658269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 33602383 - 33602528
Alignment:
Q  1 cacgctttttctctggttttccttctctagttttgttcaaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacggttagaagtatgagc 100  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33602383 cacgctttttctctggttttctttctctagtattgttcaaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacgattagaagtatgagc 33602482  T
Q  101 tggcaaatagcgaaatagtgaaatgaaatattaaacgattaaatatgttttt 152  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||    
T  33602483 tggcaaatagc------atgaaatgaaatattaaacgattaaatatgttttt 33602528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  177 aatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 236  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 314 - 462
Target Start/End: Complemental strand, 37605941 - 37605795
Alignment:
Q  314 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 413  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T
Q  414 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc 462  Q
    ||||||||| |||||  |||||||||||||||||| |||| ||| ||||    
T  37605841 ttgtacagtgccacc--ctcatgctattttcggtcgctccacctatctc 37605795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 453
Target Start/End: Complemental strand, 33361104 - 33360981
Alignment:
Q  326 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 425  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 33361008  T
Q  426 accctctcatgctattttcggtcactcc 453  Q
    | |||||||||||| |||||||||||||    
T  33361007 agcctctcatgcta-tttcggtcactcc 33360981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 5742432 - 5742556
Alignment:
Q  326 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 425  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||   |||||||||||| |||| ||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactc---cttcatctttgtgcagtgcc 5742528  T
Q  426 accctctcatgctattttcggtcactcc 453  Q
    ||||||||||||||||| | ||||||||    
T  5742529 accctctcatgctatttccagtcactcc 5742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 37606092 - 37606029
Alignment:
Q  173 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 236  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606092 caggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  174 aggaatgataagtaaacacaaaaatacaaacacaaaaatgaca 216  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 453
Target Start/End: Complemental strand, 1351 - 1228
Alignment:
Q  326 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 425  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 1255  T
Q  426 accctctcatgctattttcggtcactcc 453  Q
    | |||||||||||| |||||||||||||    
T  1254 agcctctcatgcta-tttcggtcactcc 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 453
Target Start/End: Complemental strand, 18085380 - 18085257
Alignment:
Q  326 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 425  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 18085284  T
Q  426 accctctcatgctattttcggtcactcc 453  Q
    | |||||||||||| |||||||||||||    
T  18085283 agcctctcatgcta-tttcggtcactcc 18085257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 31559483 - 31559546
Alignment:
Q  173 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 236  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559483 caggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  174 aggaatgataagtaaacacaaaaatacaaacacaaaaa 211  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University