View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3786_high_9 (Length: 248)

Name: NF3786_high_9
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3786_high_9
NF3786_high_9
[»] chr7 (24 HSPs)
chr7 (89-231)||(33602022-33602166)
chr7 (136-231)||(33601405-33601500)
chr7 (136-231)||(17944338-17944434)
chr7 (136-230)||(48507701-48507797)
chr7 (136-214)||(46280284-46280363)
chr7 (166-232)||(11619152-11619218)
chr7 (139-230)||(420342-420434)
chr7 (136-231)||(30570926-30571022)
chr7 (136-232)||(45338428-45338524)
chr7 (139-232)||(34744010-34744104)
chr7 (137-209)||(27863742-27863815)
chr7 (170-231)||(38499908-38499969)
chr7 (136-219)||(39967899-39967983)
chr7 (136-231)||(48470023-48470119)
chr7 (154-232)||(28341051-28341129)
chr7 (1-36)||(33602219-33602254)
chr7 (140-230)||(38138475-38138566)
chr7 (138-195)||(4970824-4970882)
chr7 (136-232)||(19022579-19022676)
chr7 (166-231)||(39629952-39630017)
chr7 (136-208)||(39907782-39907855)
chr7 (136-195)||(7467588-7467648)
chr7 (135-178)||(20234461-20234505)
chr7 (136-195)||(43694601-43694661)
[»] chr2 (15 HSPs)
chr2 (136-232)||(41851514-41851611)
chr2 (136-231)||(45229491-45229586)
chr2 (136-222)||(41241136-41241223)
chr2 (138-231)||(43279524-43279616)
chr2 (136-220)||(12464479-12464564)
chr2 (136-231)||(15757653-15757750)
chr2 (154-232)||(26202025-26202104)
chr2 (136-231)||(41812087-41812181)
chr2 (169-230)||(20926516-20926577)
chr2 (150-232)||(9174808-9174891)
chr2 (136-216)||(33319822-33319903)
chr2 (136-232)||(39073683-39073780)
chr2 (136-231)||(1625879-1625975)
chr2 (136-231)||(32592566-32592661)
chr2 (136-195)||(39659540-39659600)
[»] chr3 (20 HSPs)
chr3 (135-231)||(53789456-53789553)
chr3 (136-231)||(20880455-20880551)
chr3 (136-231)||(30443872-30443968)
chr3 (144-226)||(18405831-18405914)
chr3 (136-228)||(35959454-35959547)
chr3 (136-220)||(39980708-39980793)
chr3 (136-231)||(36631046-36631142)
chr3 (136-221)||(20170502-20170588)
chr3 (135-216)||(47132309-47132391)
chr3 (154-231)||(46478684-46478764)
chr3 (136-231)||(402537-402633)
chr3 (136-231)||(21367646-21367742)
chr3 (136-203)||(44061046-44061114)
chr3 (169-227)||(28795852-28795910)
chr3 (136-193)||(30956659-30956717)
chr3 (136-193)||(30972471-30972529)
chr3 (170-208)||(33883768-33883806)
chr3 (136-232)||(46778185-46778281)
chr3 (136-203)||(584025-584093)
chr3 (136-195)||(20257514-20257574)
[»] chr8 (11 HSPs)
chr8 (136-231)||(26771244-26771340)
chr8 (136-231)||(10758252-10758347)
chr8 (136-231)||(18133635-18133731)
chr8 (136-231)||(27028810-27028906)
chr8 (135-228)||(25930552-25930646)
chr8 (135-228)||(38648329-38648423)
chr8 (166-221)||(12976223-12976277)
chr8 (136-194)||(42043377-42043436)
chr8 (166-228)||(16347200-16347262)
chr8 (138-195)||(6881908-6881965)
chr8 (144-195)||(11861791-11861843)
[»] chr4 (18 HSPs)
chr4 (136-231)||(17822860-17822956)
chr4 (136-228)||(50681087-50681180)
chr4 (136-221)||(53294119-53294205)
chr4 (166-231)||(30668362-30668426)
chr4 (144-231)||(55414415-55414503)
chr4 (138-232)||(7839355-7839450)
chr4 (172-231)||(13126571-13126630)
chr4 (142-216)||(16199991-16200066)
chr4 (141-231)||(21731651-21731742)
chr4 (144-232)||(46588067-46588157)
chr4 (166-232)||(46592203-46592269)
chr4 (141-231)||(2244032-2244126)
chr4 (147-228)||(50662736-50662818)
chr4 (139-231)||(41512633-41512726)
chr4 (166-231)||(54426053-54426118)
chr4 (170-231)||(55302263-55302324)
chr4 (136-195)||(15177233-15177293)
chr4 (144-231)||(22030190-22030278)
[»] chr1 (22 HSPs)
chr1 (136-232)||(24915045-24915142)
chr1 (136-232)||(3234009-3234106)
chr1 (136-231)||(14576649-14576744)
chr1 (136-231)||(17603379-17603475)
chr1 (144-231)||(49938734-49938822)
chr1 (137-231)||(51688685-51688779)
chr1 (169-231)||(15477578-15477640)
chr1 (136-231)||(27976574-27976679)
chr1 (136-231)||(30286514-30286611)
chr1 (171-232)||(37473418-37473479)
chr1 (143-231)||(42174841-42174930)
chr1 (136-221)||(47432075-47432160)
chr1 (141-232)||(36872716-36872807)
chr1 (136-231)||(41195189-41195284)
chr1 (136-230)||(13809977-13810072)
chr1 (137-219)||(27820344-27820427)
chr1 (137-227)||(37631558-37631649)
chr1 (138-192)||(39596578-39596633)
chr1 (136-221)||(473143-473229)
chr1 (139-208)||(49888749-49888819)
chr1 (138-231)||(51929534-51929628)
chr1 (139-219)||(2777874-2777955)
[»] chr5 (14 HSPs)
chr5 (136-231)||(16937878-16937974)
chr5 (136-231)||(16457974-16458070)
chr5 (166-232)||(12857699-12857765)
chr5 (140-231)||(25461074-25461166)
chr5 (136-231)||(39105443-39105539)
chr5 (137-231)||(40426745-40426840)
chr5 (170-224)||(4014426-4014480)
chr5 (166-232)||(12857332-12857398)
chr5 (136-209)||(29925820-29925894)
chr5 (144-229)||(43300865-43300951)
chr5 (182-231)||(3735153-3735202)
chr5 (135-231)||(10639931-10640028)
chr5 (183-228)||(34669728-34669773)
chr5 (157-221)||(13697764-13697828)
[»] chr6 (7 HSPs)
chr6 (138-231)||(34430456-34430550)
chr6 (139-221)||(6536597-6536680)
chr6 (136-206)||(6909892-6909963)
chr6 (170-231)||(9763574-9763635)
chr6 (136-208)||(837234-837307)
chr6 (136-208)||(9093574-9093647)
chr6 (170-219)||(31813175-31813224)
[»] scaffold0050 (1 HSPs)
scaffold0050 (170-230)||(58756-58816)
[»] scaffold0221 (1 HSPs)
scaffold0221 (170-231)||(22245-22306)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 33602166 - 33602022
Alignment:
Q  89 gatctggaaaatcaacgtaacag--caatttcgttatagnnnnnnngtattaaattgtttttgtatttgctataagtggttttataagctatcttagaga 186  Q
    |||||||||||||||||||||||  ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602166 gatctggaaaatcaacgtaacagagcaatttcgttatagtttttttgtattaaattgtttttgtatttgctataagtggttttataagctatcttagaga 33602067  T
Q  187 acttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33602066 acttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 33602022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 33601500 - 33601405
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33601500 ttaaattatttttgtatttgctataagttgttttataagctatcttagagaacttatgaatttaagctgaaaaaagcttatgaaaagtgtcataag 33601405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 17944434 - 17944338
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| || | ||||| ||||| ||||| |||||| || || ||||||| ||||||||||||| || ||||||||||||||||||    
T  17944434 ttaaattgtttttgtatatgttgtaagttgttttcataagttatcttggataatttatgaaattaagctgaaaaaagcatatgaaaagtgtcataag 17944338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 48507701 - 48507797
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatc-ttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 230  Q
    ||||||||||||||||| ||||||||   ||||| |||||| ||| |||||||||||||||| |||||||||||||  ||||| |||| ||||||||    
T  48507701 ttaaattgtttttgtatatgctataaactgttttcataagccatccttagagaacttatgaaattaagctgaaaaatacttataaaaaatgtcataa 48507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 46280363 - 46280284
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggctt 214  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| || |||||||||||||  || ||||||||| ||||    
T  46280363 ttaaattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaaagctt 46280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 11619218 - 11619152
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||  || ||||||||||||| ||||| ||||||| ||||||||||| ||||||||||    
T  11619218 ttttataagctacgttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagt 11619152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 420342 - 420434
Alignment:
Q  139 aattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 230  Q
    |||||||||||||| |||||||||| ||||   |||||||| || |||||||||||||  |||| ||||||||||||  ||||| ||||||||    
T  420342 aattgtttttgtatatgctataagttgtttccgtaagctatattggagaacttatgaaaataagttgaaaaaggctttagaaaactgtcataa 420434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 30571022 - 30570926
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||| ||||||||| ||||||||| |  |||||||| |||  || ||||||||||||| ||||  ||||||| ||||||||||| |||||||||    
T  30571022 ttaaattatttttgtatatgctataagctatttttataacctacattggagaacttatgaaattaacatgaaaaaagcttatgaaaattgtcataag 30570926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 45338428 - 45338524
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||||| |||| ||||| ||||| |||||||| || ||||||| |||||  |||| |||||||  || || |||| ||||||||||    
T  45338428 ttaaattgtttttgtatatgctgtaagttgttttttaagctatattggagaactgatgaaaataagttgaaaaaaactaataaaaattgtcataagt 45338524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 34744010 - 34744104
Alignment:
Q  139 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    |||||||||||||| || ||||||| ||||| ||||||||| || |||||||||| ||  ||||  |||||| |||| |||||| ||||||||||    
T  34744010 aattgtttttgtatatggtataagttgttttcataagctatattggagaacttataaaaataaggcgaaaaaagcttgtgaaaattgtcataagt 34744104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 27863815 - 27863742
Alignment:
Q  137 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaa 209  Q
    |||||| | ||||||| |||||||||| |||||| ||| |||| ||||||||||||||||  ||||||||||||    
T  27863815 taaattttatttgtatatgctataagttgttttaataaactatattagagaacttatgaacataagctgaaaaa 27863742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 38499969 - 38499908
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||| ||||| |||||||||||||  ||||||| |||| ||||||||||| |||||||||    
T  38499969 ataagcaatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataag 38499908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 39967899 - 39967983
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaa 219  Q
    |||||||||||| ||| | ||||||||| ||||| ||||||||||| |||||||| |||||  |||| ||||||  |||||||||    
T  39967899 ttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaa 39967983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 48470023 - 48470119
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| |  ||||||| ||||| ||||||||| ||  | ||||||||||  |||||| ||||| ||||||||||| || ||||||    
T  48470023 ttaaattgtttttgtatataatataagttgttttcataagctattttgaataacttatgaacataagctcaaaaaagcttatgaaaaatgccataag 48470119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 28341129 - 28341051
Alignment:
Q  154 tgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    |||||||||| |||| ||||| |||| ||||||||||||||||  ||||||| |||| |||| |||||| ||||||||||    
T  28341129 tgctataagttgtttgtataaactatattagagaacttatgaa-ataagctggaaaaagcttttgaaaattgtcataagt 28341051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33602254 - 33602219
Alignment:
Q  1 tttttgtatcgaatttcagtgcgattgaacatcatc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33602254 tttttgtatcgaattccagtgcgattgaacatcatc 33602219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 38138566 - 38138475
Alignment:
Q  140 attgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 230  Q
    |||| |||||||| |||||||||| ||||| || |||||| ||   |||||||||||  |||| ||||||| ||||||||||| ||||||||    
T  38138566 attgattttgtatatgctataagttgtttttattagctatattgacgaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataa 38138475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 4970882 - 4970824
Alignment:
Q  138 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 195  Q
    ||||||||||||||| ||||||||||  |||| ||||| ||| ||||||||||||||||    
T  4970882 aaattgtttttgtatatgctataagttctttttataagatatattagagaacttatgaa 4970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 19022676 - 19022579
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||  ||  |||||||||| ||||| ||||||||| || |||||||||||||  |||| |||| |   |||||||||| ||||||||||    
T  19022676 ttaaattgttttaataaatgctataagttgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagt 19022579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 39630017 - 39629952
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||| |||||||| ||  ||||||||||| | |||| ||||||| ||||||||||| |||||||||    
T  39630017 ttttttaagctatattgaagaacttatgactataagttgaaaaaagcttatgaaaattgtcataag 39629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 39907782 - 39907855
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 208  Q
    |||||||||||||||||  |||||||   ||||| |||| ||||||||||||||| |||||  |||||||||||    
T  39907782 ttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaa 39907855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 7467588 - 7467648
Alignment:
Q  136 ttaaattgttttt-gtatttgctataagtggttttataagctatcttagagaacttatgaa 195  Q
    ||||||||||||| |||| ||||||||||| ||| | ||| |||||||| |||||||||||    
T  7467588 ttaaattgttttttgtatatgctataagtgatttcagaagttatcttagtgaacttatgaa 7467648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 20234461 - 20234505
Alignment:
Q  135 attaaattgtttttgtatttgctataagtggtttta-taagctat 178  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  20234461 attaaattgtttttgtaattgctataagttgttttactaagctat 20234505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 43694661 - 43694601
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaa 195  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| |   ||||||||||||    
T  43694661 ttaaattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaa 43694601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 41851514 - 41851611
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||||| |||||||||| ||||| | |||||||||| ||||| ||||||| ||||||||| ||| ||||||||||||||||||||||    
T  41851514 ttaaattgtttttgtatatgctataagttgttttcagaagctatcttggagaatttatgaaattaagctgagaaaagcttatgaaaagtgtcataagt 41851611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 45229491 - 45229586
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| || ||| | || ||| |||||||||||| |||||||||||||  |||||||||||| ||| ||||||| |||||||||    
T  45229491 ttaaattgtttttgtatatgttatcattgttttcataagctatcttcgagaacttatgaaaataagctgaaaaaagctaatgaaaaatgtcataag 45229586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 41241223 - 41241136
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaag 222  Q
    ||||||||||||||||| |||||||||| |||||  |||| |||||| || ||||| |||| ||||||||||||| ||||||| ||||    
T  41241223 ttaaattgtttttgtatatgctataagtagttttcctaagttatcttggaaaacttgtgaaattaagctgaaaaaagcttatggaaag 41241136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 43279616 - 43279524
Alignment:
Q  138 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||||||  ||||||||| ||||| ||||||||| || |||||||| ||||  |||| ||||||| ||||||||||| |||||||||    
T  43279616 aaattgtttttgtat--gctataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataag 43279524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 12464564 - 12464479
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaa 220  Q
    ||||||||||||||||| |||||||||   |||| |||||||||||| |||||||| ||||  |||||||||||| |||| |||||    
T  12464564 ttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagcttgtgaaa 12464479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 15757750 - 15757653
Alignment:
Q  136 ttaaattgttttt-gtatttgctataagtggt-tttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||| |||| |||||||||| || ||||||||||||   ||||||| ||||||  |||||||||||| |||| |||||| |||||||||    
T  15757750 ttaaattgttttttgtatatgctataagttgtatttataagctatacaagagaacgtatgaaaataagctgaaaaaagcttctgaaaattgtcataag 15757653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 26202025 - 26202104
Alignment:
Q  154 tgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    |||||||||| ||||| ||||| ||| || |||||||||||||  |||| ||||||| ||||||||||| ||||||||||    
T  26202025 tgctataagttgtttttataagatatattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagt 26202104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 41812181 - 41812087
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| ||||| |||  |||| | |||||||||| || |||||| |||  |||| ||||||| ||||||||||| |||||||||    
T  41812181 ttaaattgtttttgtatatgctacaagatgtttcaaaagctatcttggaaaacttaggaa-ataagttgaaaaaagcttatgaaaaatgtcataag 41812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 20926516 - 20926577
Alignment:
Q  169 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 230  Q
    |||||||||| ||||||||||||||||  |||| ||||||| ||| ||||||| ||||||||    
T  20926516 tataagctatattagagaacttatgaaaataagttgaaaaaagctaatgaaaattgtcataa 20926577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 9174808 - 9174891
Alignment:
Q  150 tatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||| |||||||  ||||| ||||||||||||| ||| ||||||||  |||||||||||  ||||||||| | ||||||||||    
T  9174808 tatttactataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatgaacaatgtcataagt 9174891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 33319903 - 33319822
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttat 216  Q
    ||||| ||||||||||| | ||||||   ||||| |||| ||||||| |||||||||||||  |||||||||||| ||||||    
T  33319903 ttaaactgtttttgtatatactataaactgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 33319822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 39073780 - 39073683
Alignment:
Q  136 ttaaattgtttttgtatttgctataagt-ggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||||| ||||||||||   ||||||||||||| || |||||||  ||||  |||| ||||  |  |||||||||| ||||||||||    
T  39073780 ttaaattgtttttgtatatgctataagtaatttttataagctatattggagaactagtgaaaataagttgaacgaaacttatgaaaattgtcataagt 39073683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 1625879 - 1625975
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||| ||||  | ||||||| ||||| |||||||||||| ||||||||| |||  | |||||||||   |||||||| | |||||||||    
T  1625879 ttaaattgttttcgtataagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtcataag 1625975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 32592566 - 32592661
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||| ||||  ||||||||| ||||| |||||| || || |||||||||||||  |||| ||| ||| ||||||||||| |||| ||||    
T  32592566 ttaaattgtttt-gtatacgctataagttgtttttataagcaatattggagaacttatgaaaataagttgagaaaagcttatgaaaattgtcgtaag 32592661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 39659600 - 39659540
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 195  Q
    ||||||||||||||| | || ||||| | ||||| ||||||||| ||||||||||||||||    
T  39659600 ttaaattgtttttgtctatgttataacttgtttttataagctatattagagaacttatgaa 39659540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 53789553 - 53789456
Alignment:
Q  135 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||| |||||| |||| |||||||||| ||| | |||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  53789553 attaaaatgttttggtatatgctataagttgttatcataagctatcatggagaacttatgaaattaagctgaaaaaagcttatgaaaagtgtcataag 53789456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 20880455 - 20880551
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| ||||||||  || ||||| ||||||| || |||||||||||||  |||||| ||||| ||||||||||| |||||||||    
T  20880455 ttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatgaaaattgtcataag 20880551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 30443872 - 30443968
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||| |||||||| ||||||||| || |||||||| |||| || |||||||||||||  |||||||||||| |||| |||||| |||||||||    
T  30443872 ttaaattgcttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgtcataag 30443968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 18405914 - 18405831
Alignment:
Q  144 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtc 226  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||||||||||| |||||||  |||| | ||||||||||||||    
T  18405914 tttttgtatatgctataagttgttttcataagctatcttggagaacttatgaaattaagcttgaaaaagattatgaaaagtgtc 18405831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 35959547 - 35959454
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    ||||||| ||||||||| |||| ||||| |||| |||||||||| |||||||| || ||||  |||||||||||| |||| |||||| ||||||    
T  35959547 ttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaatttttgaaaataagctgaaaaaagcttttgaaaattgtcat 35959454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 39980708 - 39980793
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaa 220  Q
    |||||||||||||| |  |||||||||| ||||| ||||||||| || |||||||||||||  |||| ||||||| ||||||||||    
T  39980708 ttaaattgtttttgaacatgctataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaa 39980793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 36631142 - 36631046
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||  |||||||||| ||||| || |||||| || |||||||||||||  ||||| |||||| |||| ||||||  ||||||||    
T  36631142 ttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataagcagaaaaaagcttttgaaaatcgtcataag 36631046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 20170502 - 20170588
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    ||||||||||||||||| ||||||||| || ||||| ||| ||| || ||||||| |||||  |||| ||||||| |||||||||||    
T  20170502 ttaaattgtttttgtatatgctataagttgtttttacaagttatttttgagaactaatgaaaataagttgaaaaaagcttatgaaaa 20170588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 47132309 - 47132391
Alignment:
Q  135 attaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttat 216  Q
    |||||||||||||||||| ||||||| | || ||||||||||||| || ||||| |||||||  |||| ||||||| ||||||    
T  47132309 attaaattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaataagttgaaaaaagcttat 47132391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 46478684 - 46478764
Alignment:
Q  154 tgctataagt-ggttttataagctatct--tagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||| ||||||||||||||| |  | |||||||||||||  |||| ||||||| ||||||||||| |||||||||    
T  46478684 tgctataagttggttttataagctatatattggagaacttatgaaaataagttgaaaaaagcttatgaaaactgtcataag 46478764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 402633 - 402537
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||| ||||  | |||||| || |||||||| |||||||  ||||||| |||| ||||||||||||  ||||||||| | |||||||||    
T  402633 ttaaattgttttcgtataagttataagctgtttttataatctatcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtcataag 402537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 21367646 - 21367742
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||| ||||    ||||||| ||||| |||||||||||| |||||||||||||  |||||||||||  |||| |||| | |||||||||    
T  21367646 ttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataag 21367742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 44061114 - 44061046
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagct 203  Q
    ||||||||||||| |||  ||||||||| ||||| ||| | |||||||||||||||||||| |||||||    
T  44061114 ttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatgaaattaagct 44061046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 28795910 - 28795852
Alignment:
Q  169 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtca 227  Q
    |||||||||| ||||||||||||||||  |||||||||||  ||||| ||||| |||||    
T  28795910 tataagctatattagagaacttatgaaaataagctgaaaagagcttaagaaaattgtca 28795852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 30956717 - 30956659
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatg 193  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||| |||||||||||    
T  30956717 ttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 30972529 - 30972471
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatg 193  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||| |||||||||||    
T  30972529 ttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 33883806 - 33883768
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaa 208  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaa 33883768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 46778281 - 46778185
Alignment:
Q  136 ttaaattgtttttgtatttgctat-aagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||| | |||||| || || ||| |||| ||||||| || ||||||||||  ||||||||| ||  |||||||||| ||||||||||    
T  46778281 ttaaattgtttttgtttatgctataaactgttttcataaactatcttggacaacttatgaa-ataagctgaacaaaacttatgaaaaatgtcataagt 46778185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 584025 - 584093
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtg-gttttataagctatcttagagaacttatgaatttaagct 203  Q
    |||||||||||||||   ||||||||||  |||| ||||||||||||  |||||||||||| |||||||    
T  584025 ttaaattgtttttgttcatgctataagttagtttcataagctatcttgaagaacttatgaaattaagct 584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 20257514 - 20257574
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttttat-aagctatcttagagaacttatgaa 195  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||| || |||| ||||||||    
T  20257514 ttaaattgtttttgtatatgctataagttgttttttgaagctatattggagagcttatgaa 20257574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 26771244 - 26771340
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| ||||||||| |  ||||||||| ||| ||||||||||||||||  |||| |||||||||||| |||||| |||||||||    
T  26771244 ttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaattgtcataag 26771340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 10758347 - 10758252
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggt-tttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| |||||||||| || |||||||||||| ||||  ||||||||||   ||||||||||| |||| |||||| |||||||||    
T  10758347 ttaaattgtttttgtatatgctataagttgtctttataagctatattag-caacttatgaaaacaagctgaaaaaagcttttgaaaattgtcataag 10758252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 18133635 - 18133731
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||| |||||||| | ||||||| ||||||||||| |||| || |||||||||||||  |||||||||||| |||| |||||| ||| |||||    
T  18133635 ttaaattgcttttgtatatcctataagctggttttataaactatattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgttataag 18133731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 27028810 - 27028906
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||| ||||| |||||||||  ||||| |||||||||||| |||| ||||||||  |||||||||||  ||||||||||| |||| ||||    
T  27028810 ttaaattgtttgtgtatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatgaaaaatgtcctaag 27028906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 25930646 - 25930552
Alignment:
Q  135 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    |||||| ||||||||||| |||| ||| | ||||| |||||||||||| |||||||| |||   |||||||||||| ||||| ||||||||||||    
T  25930646 attaaaatgtttttgtatatgctttaaattgttttcataagctatcttggagaacttgtgatagtaagctgaaaaaagcttacgaaaagtgtcat 25930552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 38648329 - 38648423
Alignment:
Q  135 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    ||||| |||||||||||| || ||| ||| ||||| ||||||||||||  |||||||||||| ||| ||| ||||| |||||||| || ||||||    
T  38648329 attaacttgtttttgtatatgttatgagttgttttcataagctatcttgtagaacttatgaaattacgcttaaaaaagcttatgagaactgtcat 38648423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 12976223 - 12976277
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    ||||||||||||| ||||||||||||||||  |||||||||||| |||| ||||||    
T  12976223 ttttataagctatattagagaacttatgaa-ataagctgaaaaaagcttttgaaaa 12976277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 42043436 - 42043377
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatga 194  Q
    |||||||||||||| || || ||||||| ||||| |||||||||||||||||||| ||||    
T  42043436 ttaaattgtttttggatatgatataagttgttttcataagctatcttagagaactaatga 42043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 16347200 - 16347262
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    |||||||| |||||||   ||||||||||  |||||||||| || ||||||||||||||||||    
T  16347200 ttttataaactatcttgttgaacttatgatattaagctgaataaagcttatgaaaagtgtcat 16347262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 6881908 - 6881965
Alignment:
Q  138 aaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaa 195  Q
    ||||||||||| ||| |||||||||  |||||||||||||  || |||||||||||||    
T  6881908 aaattgtttttatatatgctataagctgttttataagctaaattggagaacttatgaa 6881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 11861791 - 11861843
Alignment:
Q  144 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 195  Q
    ||||||||| |||||||||| ||||| |||||||||  |||||||||||||||    
T  11861791 tttttgtatatgctataagttgtttttataagctataatagagaacttatgaa 11861843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 17822956 - 17822860
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||| || ||| |||||||||| ||||| |||||||||||| |||||||||||||  |||||| ||||| ||||||||||| |||||||||    
T  17822956 ttaaattgttattttatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataag 17822860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 50681180 - 50681087
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| || ||||| |||||||  |||  ||||||| ||||||||||| ||||||    
T  50681180 ttaaattgtttttgtatatgctataagttgtttatataagctatattggagaaattatgaaaataaattgaaaaaagcttatgaaaattgtcat 50681087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 53294205 - 53294119
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    ||||||||||||||||| ||||||||| || |||||||| |||| ||||||||||||||||   ||||||||||  |||| ||||||    
T  53294205 ttaaattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagctgaaaatagcttttgaaaa 53294119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 30668426 - 30668362
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||||||| || |  ||||||| ||||||||||||| |||||||||||||||||||||    
T  30668426 ttttataagctatcttggatagtttatgaaattaagctgaaaaa-gcttatgaaaagtgtcataag 30668362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 55414503 - 55414415
Alignment:
Q  144 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||| || |||||||| | ||||| ||||| |||||| |||||||||||||  |||| ||||||| ||||||||||| |||||||||    
T  55414503 tttttgcatatgctataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataag 55414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 7839450 - 7839355
Alignment:
Q  138 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||| |||||||| | ||||| ||||||||  ||  |||||||| |||  |||| ||||||| ||||||||||| ||||||||||    
T  7839450 aaattgtttttgtatatgctataaattgtttttataagctagattgaagaacttacgaaaataagttgaaaaaagcttatgaaaattgtcataagt 7839355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 13126630 - 13126571
Alignment:
Q  172 aagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||| |||||||||||||  |||||||||||| |||||||| || |||||||||    
T  13126630 aagctatcttcgagaacttatgaaaataagctgaaaaaagcttatgataaatgtcataag 13126571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 16200066 - 16199991
Alignment:
Q  142 tgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttat 216  Q
    ||||||||||| |||||||||  ||||| |||||||||||| ||| |||||||||  |||||| ||||||||||||    
T  16200066 tgtttttgtatatgctataagctgttttcataagctatcttggaggacttatgaaaataagctaaaaaaggcttat 16199991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 21731742 - 21731651
Alignment:
Q  141 ttgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||| |||||||||| ||||| ||||||||| || ||||| |||||||  |||| ||||||| | ||||||||| ||| |||||    
T  21731742 ttgtttttgtatgtgctataagttgtttttataagctatattggagaatttatgaaagtaagttgaaaaaagtttatgaaaattgtgataag 21731651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 46588157 - 46588067
Alignment:
Q  144 tttttgtatttgctataagtggtttt--ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||| ||| |||||||||| |||||  ||||| ||| || |||||||||||||  |||| || |||||||||||||||| ||||||||||    
T  46588157 tttttatatatgctataagttgttttttataagttatattggagaacttatgaaaataagttggaaaaggcttatgaaaattgtcataagt 46588067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 46592269 - 46592203
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||| ||| || |||||||||||||  |||| || |||||||||||||||| ||||||||||    
T  46592269 ttttataagttatattggagaacttatgaaaataagttggaaaaggcttatgaaaattgtcataagt 46592203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 2244032 - 2244126
Alignment:
Q  141 ttgtttttgtatt-tgctataagtggtttta---taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||| |||||||||| ||||||   |||||||| || |||||||||||||  |||| ||||||| | ||||||| | |||||||||    
T  2244032 ttgtttttgtattatgctataagttgttttaatataagctatattggagaacttatgaaaataaggtgaaaaaagtttatgaatattgtcataag 2244126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 50662818 - 50662736
Alignment:
Q  147 ttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    |||||| |||||||||| |||| |||||||||| || ||||| || ||||  |||| ||||||| ||||||||||| ||||||    
T  50662818 ttgtatatgctataagttgtttatataagctatattggagaaattgtgaaaataagttgaaaaaagcttatgaaaattgtcat 50662736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 41512633 - 41512726
Alignment:
Q  139 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||  | |||||||||| ||||| ||||||| |||   ||||||||||||  |||| ||| ||| ||||||||||||||| |||||    
T  41512633 aattgtttttgcgtatgctataagttgttttcataagctttctggaagaacttatgaaaataagatgataaaagcttatgaaaagtgttataag 41512726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 54426053 - 54426118
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||| |||| || |||||||||||||  |||  ||||||| ||||||||||| |||||||||    
T  54426053 ttttataatctatattggagaacttatgaaaataacttgaaaaaagcttatgaaaattgtcataag 54426118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 55302263 - 55302324
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||| || || ||||||||||  |||||||||||| ||||| ||||| |||||||||    
T  55302263 ataagctatgttggaaaacttatgaaaataagctgaaaaaagcttacgaaaattgtcataag 55302324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 15177293 - 15177233
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtgg-ttttataagctatcttagagaacttatgaa 195  Q
    |||||||||| || ||| |||||||||||| |||||||||||||  ||||||||| |||||    
T  15177293 ttaaattgttcttctatgtgctataagtggtttttataagctatactagagaactaatgaa 15177233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 22030190 - 22030278
Alignment:
Q  144 tttttgtatttgctataagtggtt-ttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||| |||||||||| ||| ||| ||| ||  ||||||||||||||||  ||| |||| ||| |||| |||||| |||||||||    
T  22030190 tttttgtatatgctataagttgttcttacaagttaaattagagaacttatgaaaataacctgagaaaagcttttgaaaattgtcataag 22030278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 24915142 - 24915045
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||||| |||||||||  ||||| ||||||| |||| |||||||| ||||  |||| ||||||| ||||||||||| ||||||||||    
T  24915142 ttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcataagt 24915045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 3234106 - 3234009
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||||||||  ||||  ||||||  |||||||||| ||| ||||||    
T  3234106 ttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagt 3234009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 14576744 - 14576649
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| |||||||| |  |||| ||||||||| ||||||||||| ||||  |||||||||||| |||| |||||| |||||||||    
T  14576744 ttaaattgtttttgtatatgctataatttttttttataagctatattagagaactt-tgaaaataagctgaaaaaagcttttgaaaattgtcataag 14576649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 17603475 - 17603379
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||| ||||  |||| || |||| | ||||||||| |||||||||    
T  17603475 ttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaataagttgtaaaaagtttatgaaaattgtcataag 17603379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 49938734 - 49938822
Alignment:
Q  144 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||  |||| ||||||| |||| |||||| |||||||||    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataag 49938822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 51688685 - 51688779
Alignment:
Q  137 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||||||  |||||||||| |||||  ||||||||| | |||| |||||||| |||||||||||||  ||| ||||||||||||||||    
T  51688685 taaattgtttttgtacatgctataagttgttttcgtaagctatcgtggaga-cttatgaaattaagctgaaaaaaacttctgaaaagtgtcataag 51688779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 15477578 - 15477640
Alignment:
Q  169 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||| ||| ||||||||||||||||| |||||||||||| |||| |||||| |||||||||    
T  15477578 tataagttatattagagaacttatgaatataagctgaaaaaagcttttgaaaattgtcataag 15477640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 27976574 - 27976679
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaactt---------atgaatttaagctgaaaaaggcttatgaaaagtgt 225  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||         |||||  |||||||||||| ||||||||||| |||    
T  27976574 ttaaattgtttttgtatatgctataagttgttttcataagctatcttcgagaacttaatgaaataatgaaaataagctgaaaaaagcttatgaaaaatgt 27976673  T
Q  226 cataag 231  Q
    ||||||    
T  27976674 cataag 27976679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 30286611 - 30286514
Alignment:
Q  136 ttaaattgtttttgtat-ttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||| ||  |||||| |  || || || ||||||| ||||||||||| |||||||||    
T  30286611 ttaaattgtttttgtatgttgctataagttgtttttataagctattttgaagaactaagaaaatttagttgaaaaaagcttatgaaaattgtcataag 30286514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 37473418 - 37473479
Alignment:
Q  171 taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    |||| |||||| |||||||||||||  ||||||| |||| ||||||||||| ||||||||||    
T  37473418 taagttatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagt 37473479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 42174841 - 42174930
Alignment:
Q  143 gtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||| |||||||||| ||||| ||||| ||| || |||||||||||||  |||| | ||||  ||||||||||| |||||||||    
T  42174841 gtttttgtatatgctataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatgaaaattgtcataag 42174930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 47432075 - 47432160
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    |||||||||||||| || |||||||||  |||||||||| ||| ||  |||| |||||||  |||||||||||| |||| ||||||    
T  47432075 ttaaattgtttttgaatatgctataaggtgttttataagttatattgaagaatttatgaaaataagctgaaaaaagcttgtgaaaa 47432160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 36872716 - 36872807
Alignment:
Q  141 ttgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    |||||||||||| ||||||||| || ||||| ||||||| ||  ||||||||||||  |||| ||||||| |||||| |||| ||||||||||    
T  36872716 ttgtttttgtatgtgctataagttgtttttacaagctatattgcagaacttatgaaaataagttgaaaaa-gcttatcaaaattgtcataagt 36872807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 41195284 - 41195189
Alignment:
Q  136 ttaaattgtttttgtatttgctat-aagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||| ||||||||||| | |||| || || ||| |||| ||||||| |||||||||||||  |||||||||||| |||||| |||| |||||||||    
T  41195284 ttaaactgtttttgtatatactatcaactgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttattaaaa-tgtcataag 41195189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 13809977 - 13810072
Alignment:
Q  136 ttaaattgtttttgtatttgctata-agtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 230  Q
    ||||||||||||||||| ||||||| | || |||||||| |||| ||||||||||| ||||  |||||| | |||  ||| |||||| ||||||||    
T  13809977 ttaaattgtttttgtatatgctatatattgtttttataaactatattagagaacttgtgaaaataagctaagaaaaacttttgaaaattgtcataa 13810072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 27820427 - 27820344
Alignment:
Q  137 taaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaa 219  Q
    |||||||||| |||||  |||||| | || |||||||||||||||| ||||| |||||||  |||||||||||  |||||||||    
T  27820427 taaattgtttatgtataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaa 27820344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 37631649 - 37631558
Alignment:
Q  137 taaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtca 227  Q
    |||||||||||||| | || ||| || || |||| |||||||| || |||||||||||||  |||||||||||| |||| |||||| |||||    
T  37631649 taaattgtttttgtgtatgatattagctgtttttgtaagctatattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgtca 37631558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 39596578 - 39596633
Alignment:
Q  138 aaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttat 192  Q
    |||||||||||||||  |||||||| ||||||||||||||||||| |||| |||||    
T  39596578 aaattgtttttgtataagctataagatggttttataagctatcttggagagcttat 39596633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 473143 - 473229
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    |||||||||||| || | |||||||||| ||||| ||||| | | || |||||||||||||  |||| ||||||| |||||||||||    
T  473143 ttaaattgttttcgtgtatgctataagttgtttttataagttctattggagaacttatgaaaataagttgaaaaaagcttatgaaaa 473229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 49888749 - 49888819
Alignment:
Q  139 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 208  Q
    ||||||||| ||||  ||||| ||| ||||| ||||||||||||||||||||||||||  ||||| |||||    
T  49888749 aattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataagccgaaaa 49888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 51929628 - 51929534
Alignment:
Q  138 aaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||| ||| |||  |||| || |||||||| |||| || ||||||||||| |  |||| ||||||| ||||||||||| |||||||||    
T  51929628 aaattgtttttatatatgccttaagctgtttttataaactatattggagaacttatggaaataagttgaaaaaagcttatgaaaattgtcataag 51929534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 2777874 - 2777955
Alignment:
Q  139 aattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaa 219  Q
    |||||| |||||||  ||||||||  |||||| |||| || ||| |||||||||||||  ||||||||||| ||||||||||    
T  2777874 aattgtctttgtataagctataagctgttttaataagttaacttggagaacttatgaaaataagctgaaaacggcttatgaa 2777955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 16937974 - 16937878
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| |||||||||| ||||| ||| ||||| || ||||||||| |||  |||||||||||| ||||||||||  |||||||||    
T  16937974 ttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctgaaaaaagcttatgaaatttgtcataag 16937878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 16458070 - 16457974
Alignment:
Q  136 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||| ||||||||| || |||||| |||||  || |||||||| ||||  ||| |||||||  ||||||||||| |||||||||    
T  16458070 ttaaattgtttttgtatatgctataagttgtttttatgagctaaattggagaacttgtgaaaataaactgaaaagagcttatgaaaactgtcataag 16457974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 12857765 - 12857699
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||| || |||||||||||||  |||||||||||| | || |||||| ||||||||||    
T  12857765 ttttataagctatattggagaacttatgaaaataagctgaaaaaaggttgtgaaaattgtcataagt 12857699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 25461074 - 25461166
Alignment:
Q  140 attgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||| || ||||||| ||||| ||||||| | || ||||||| |||||  |||||||||||| | ||||||||| || ||||||    
T  25461074 attgtttttgtatatgttataagttgttttcataagctctattggagaactgatgaaaataagctgaaaaacgtttatgaaaattgccataag 25461166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 39105443 - 39105539
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||| ||||  |||||||   ||||| |||||||||||| |||||||||||||  |||||| ||||  ||||||||| | |||||||||    
T  39105443 ttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataag 39105539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 40426745 - 40426840
Alignment:
Q  137 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||||||||| ||||  ||||   |||||| |||| ||||||||| |||  |||||| ||||| ||||||||||| || ||||||    
T  40426745 taaattgtttttgtatttgctgtaagctgtttccgtaagctgtcttggagaacttacgaaaataagcttaaaaaagcttatgaaaaatggcataag 40426840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 4014480 - 4014426
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtg 224  Q
    |||||||||||| |||||||||||||  |||||||||||  ||||||||| ||||    
T  4014480 ataagctatcttggagaacttatgaaaataagctgaaaacagcttatgaacagtg 4014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 12857398 - 12857332
Alignment:
Q  166 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagt 232  Q
    ||||||||||||| || |||||||||  ||  |||||||||||| |||| |||||| ||||||||||    
T  12857398 ttttataagctatattggagaacttacaaaaataagctgaaaaaagcttgtgaaaattgtcataagt 12857332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 29925820 - 29925894
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaa 209  Q
    ||||||||||| ||||| |||||||||| ||||  ||||||||| || |||||||||||||  |||| |||||||    
T  29925820 ttaaattgtttctgtatgtgctataagttgtttacataagctatattggagaacttatgaaaataagttgaaaaa 29925894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 43300865 - 43300951
Alignment:
Q  144 tttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcata 229  Q
    ||||||||| | |||||||| |||||  ||||||||||| |||||||||||||  |||||||||| | ||||||  ||| |||||||    
T  43300865 tttttgtatatcctataagttgtttttgtaagctatcttggagaacttatgaaaataagctgaaacatgcttatataaaatgtcata 43300951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 3735202 - 3735153
Alignment:
Q  182 agagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||  |||||||||||| |||| |||||| |||||||||    
T  3735202 agagaacttatgaagataagctgaaaaaagcttttgaaaattgtcataag 3735153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 10639931 - 10640028
Alignment:
Q  135 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    |||||||||||||||||| ||  || ||| ||||  |||| |||| || |||||||||||||  ||||||  |||| ||||||||||| |||||||||    
T  10639931 attaaattgtttttgtatatgtgatgagttgtttacataaactattttggagaacttatgaaaataagctagaaaaagcttatgaaaaatgtcataag 10640028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 34669773 - 34669728
Alignment:
Q  183 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 228  Q
    |||||||| |||| ||||||||||||| ||||||||||| ||||||    
T  34669773 gagaacttctgaaattaagctgaaaaaagcttatgaaaaatgtcat 34669728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 13697828 - 13697764
Alignment:
Q  157 tataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    ||||||| |||||||||||||| || ||||| |||||||  |||| |||||||  ||||||||||    
T  13697828 tataagttgttttataagctatgttggagaagttatgaaaataagttgaaaaaaacttatgaaaa 13697764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 34430550 - 34430456
Alignment:
Q  138 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||||||||| || ||||||  ||||| |||||||||||| ||||| |||||||  |||||||||||| |||||||| || |||||||||    
T  34430550 aaattgtttttgtatatgttataaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatgataaatgtcataag 34430456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 6536597 - 6536680
Alignment:
Q  139 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 221  Q
    |||||||||||||| |||||||||| ||||| | ||||||| || ||||| |||||||  |||| ||||||| |||||||||||    
T  6536597 aattgtttttgtatatgctataagttgtttttagaagctatattggagaatttatgaaaataagttgaaaaaagcttatgaaaa 6536680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 6909963 - 6909892
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaa 206  Q
    ||||||||||||||||| |||||||||| ||||| ||||  |||||| ||||| ||||||| ||||||||||    
T  6909963 ttaaattgtttttgtatatgctataagttgttttcataacatatcttggagaatttatgaaattaagctgaa 6909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 9763574 - 9763635
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||| ||  |||||||||||| ||||| ||||||| |||||| ||||||||||||||    
T  9763574 ataagctatattgtagaacttatgaaattaagttgaaaaaagcttatcaaaagtgtcataag 9763635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 837307 - 837234
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 208  Q
    |||||||||||| || |  ||||||||| ||||| || ||||||||| |||||||||||||  |||||||||||    
T  837307 ttaaattgttttggtgtaagctataagtagttttcattagctatcttggagaacttatgaaaataagctgaaaa 837234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 9093647 - 9093574
Alignment:
Q  136 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 208  Q
    |||||||||||| ||||  ||||||||  ||||| ||||||| |||||||||||||| |||  |||||||||||    
T  9093647 ttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 31813175 - 31813224
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaa 219  Q
    |||||||||||| |||||| ||||||  ||||||||||| ||||||||||    
T  31813175 ataagctatcttggagaacatatgaaaataagctgaaaacggcttatgaa 31813224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 58756 - 58816
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 230  Q
    ||||||||| ||  |||||||||||| ||||| ||||||| ||||||||||| ||||||||    
T  58756 ataagctatgttgaagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataa 58816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 22245 - 22306
Alignment:
Q  170 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 231  Q
    ||||||||| || || ||||||||||  |||||||||||| ||||| ||||| |||||||||    
T  22245 ataagctatgttggaaaacttatgaaaataagctgaaaaaagcttacgaaaattgtcataag 22306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University