View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3786_low_11 (Length: 231)
Name: NF3786_low_11
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3786_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 45978198 - 45978125
Alignment:
| Q |
33 |
ttgggtcgcgatttatttgaaaattaaatgttgtcaaattgttgtttgtattttgtcactttaagccttatcta |
106 |
Q |
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| T |
45978198 |
ttgggtcgcgatttatttgaaaattaaatgttgttaagttgttgtttgtattttgtcactttatgccttatcta |
45978125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 45976773 - 45976714
Alignment:
| Q |
155 |
tagattgaaatggaatccgtccatttcaatatgatttctatccctatctacgagtaaatt |
214 |
Q |
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| T |
45976773 |
tagattgaaatggaatccgtccatttcaatatgatttctatccctatctactagtaaatt |
45976714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 45977938 - 45977896
Alignment:
| Q |
98 |
ccttatctattatttaactccattgcattatttatttggaatc |
140 |
Q |
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| T |
45977938 |
ccttatctattatttaactccattgcattatttgtttggaatc |
45977896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 45977902 - 45977863
Alignment:
| Q |
165 |
tggaatccgtccatttcaatatgatttctatccctatcta |
204 |
Q |
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| T |
45977902 |
tggaatccgtctatttcaatatgatttctatccttatcta |
45977863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 32463259 - 32463132
Alignment:
| Q |
10 |
ggagcagagagttgttggaaaagttgggtcgcgatttatttgaaaattaaatgttgtcaaattgttgtttgtattttgtcactttaagccttatctatta |
109 |
Q |
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| T |
32463259 |
ggagcaaagagctgttggaaaagttgggctgcgatctgtttggaaattaattgttgtcaagtcgttgtttgtattttgtcaccttttgccttatctattg |
32463160 |
T |
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| Q |
110 |
tttaactccattgcattatttatttgga |
137 |
Q |
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| T |
32463159 |
tttaacttcattgtattatttgtttgga |
32463132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 36565020 - 36565097
Alignment:
| Q |
60 |
atgttgtcaaattgttgtttgtattttgtcactttaagccttatctattatttaactccattgcattatttatttgga |
137 |
Q |
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| T |
36565020 |
atgttgtcaaatcgttgtttgtattttgtcactttgtgccttatctattatttaactccattgcattatctgtttgga |
36565097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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